Mir-278-P2

MirGeneDB ID

Efe-Mir-278-P2

Family name

MIR-278 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-278-P1-v1

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.249401: 3113-3172 [+]

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

GCCUGGUUCCUGGUCGGUUUUCUCGCCCGUACGAGCGAAUGUUCUCACGCGAUCUUAGAUUUGAAUGAUCGGUGGGAUUUUCGUUCGUUCUGGAGGUGGAACUCUCUCCGAACUCACGAG

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Structure

        10        20        30           40        50        60
GCCUGGUUCCUGGUCGGUU   U    CGU---|        UGU      G     UUAGA 
                   UUC CGCC      ACGAGCGAA   UCUCAC CGAUC     U
                   AAG GUGG      UGCUUGCUU   AGGGUG GCUAG     U
GAGCACUCAAGCCUCUCUC   -    AGGUCU^        UU-      -     UAAGU 
.       110       100         90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-278-P2_5p*

mirBase accession

None

Sequence

0- ACGAGCGAAUGUUCUCACGCGAUC -24

Get sequence

Mature sequence

Efe-Mir-278-P2_3p

mirBase accession

None

Sequence

38- UCGGUGGGAUUUUCGUUCGUUC -60

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