Mir-278

MirGeneDB ID

Dme-Mir-278

Family name

MIR-278 (all species)

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Spu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 15657083-15657143 [+] UCSC Ensembl

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

AUACGAGACCAUGGUAAUGGUACGGUGCGACCGGAUGAUGGUUCACAACGACCGUGUCAUUUAAACGGGUCGGUGGGACUUUCGUCCGUUUGUAACGCCAUUUGUCAACGAUUUAUCAGUG

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Structure

        10            20        30        40        50        60
AUACGAGACCAUGGUAA----|   ACGG     C       U     A  A     GUGUCA 
                     UGGU    UGCGA CGGAUGA GGUUC CA CGACC      U
                     ACCG    AUGUU GCCUGCU UCAGG GU GCUGG      U
GUGACUAUUUAGCAACUGUUU^   CA--     U       U     -  G     GCAAAU 
 .       110       100          90        80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-278_5p*

mirBase accession

MIMAT0020805

Sequence

0- CCGGAUGAUGGUUCACAACGACC -23

Get sequence

Mature sequence

Dme-Mir-278_3p

mirBase accession

MIMAT0000339

Sequence

39- UCGGUGGGACUUUCGUCCGUUU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000339
TargetScanFly: dme-miR-278