Mir-278

MirGeneDB ID

Spu-Mir-278

Family name

MIR-278 (all species)

Species

Purple sea urchin (Strongylocentrotus purpuratus)

MiRBase ID

spu-mir-278

Paralogues

Orthologues

Aae-Mir-278 Aga-Mir-278 Agr-Mir-278 Ava-Mir-278 Bfl-Mir-278 Bge-Mir-278 Bla-Mir-278 Csc-Mir-278 Cte-Mir-278 Dan-Mir-278 Dgr-Mir-278 Dlo-Mir-278 Dma-Mir-278 Dme-Mir-278 Dmo-Mir-278 Dpu-Mir-278 Dsi-Mir-278 Dya-Mir-278 Eba-Mir-278 Efe-Mir-278-P1-v1 Efe-Mir-278-P2 Esc-Mir-278 Gpa-Mir-278 Gsa-Mir-278 Hme-Mir-278 Hru-Mir-278 Isc-Mir-278 Lan-Mir-278 Lgi-Mir-278 Lhy-Mir-278 Llo-Mir-278-P6 Llo-Mir-278-P7 Lpo-Mir-278-P3 Lpo-Mir-278-P4 Lpo-Mir-278-P5 Mgi-Mir-278 Mom-Mir-278 Npo-Mir-278 Obi-Mir-278 Ofu-Mir-278 Ovu-Mir-278 Pau-Mir-278 Pca-Mir-278 Pcr-Mir-278 Pdu-Mir-278 Pfl-Mir-278 Pmi-Mir-278 Pve-Mir-278 Rph-Mir-278 Sko-Mir-278 Sme-Mir-278 Snu-Mir-278 Tur-Mir-278 War-Mir-278 Xbo-Mir-278

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Spur_5.0)

AAGJ06000002.1: 25922652-25922716 [-] Ensembl

Seed

CGGUGGG

Precursor
(pre-Mir +30nt flank)

ACAUGUCCCUGAUCAAACUGCCUCUUCUCCUGGAAUGAAAGCCUCGCCAAUCUGUCAUUGUUACUAAGCUAGGUCGGUGGGACUUUCGUUCGAUUAGAAGAUGGUAGAUACUAACUUCUAUUGAG

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Structure

        10         20         30        40        50        60  
ACAUGUCCCUGAUCAAA-     -|     CCUG         C      A   UGUCAUUGU 
                  CUGCC UCUUCU    GAAUGAAAG CUCGCC AUC         \
                  GAUGG AGAAGA    CUUGCUUUC GGGUGG UGG         U
GAGUUAUCUUCAAUCAUA     U^     UUAG         A      C   AUCGAAUCA 
   120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

32	Bl	Eg	Ga	Ov	Pl	To	To

Star sequence

Spu-Mir-278_5p*

mirBase accession

MIMAT0019163

Sequence

0- UGGAAUGAAAGCCUCGCCAAUC -22

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Mature sequence

Spu-Mir-278_3p

mirBase accession

MIMAT0009674

Sequence

43- UCGGUGGGACUUUCGUUCGAUU -65

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