MirGeneDB ID | Isc-Mir-22-P2 |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Deer tick (Ixodes scapularis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aae-Mir-22-P2
Asu-Mir-22-P2
Bge-Mir-22-P2
Cbr-Mir-22-P2-v1
Cbr-Mir-22-P2-v2
Cel-Mir-22-P2
Cgi-Mir-22-P2
Csc-Mir-22-P2
Cte-Mir-22-P2
Dan-Mir-22-P2
Dma-Mir-22-P2
Dme-Mir-22-P2
Dmo-Mir-22-P2
Dpu-Mir-22-P2
Dsi-Mir-22-P2
Dya-Mir-22-P2
Esc-Mir-22-P2
Hme-Mir-22-P2
Lan-Mir-22-P2
Lgi-Mir-22-P2
Lpo-Mir-22-P2a
Lpo-Mir-22-P2b
Lpo-Mir-22-P2c
Lpo-Mir-22-P2d
Npo-Mir-22-P2
Ovu-Mir-22-P2
Pfl-Mir-22-o2
Pmi-Mir-22-o2
Sko-Mir-22-o2
Spu-Mir-22-o2
Tca-Mir-22-P2-v1
Tca-Mir-22-P2-v2
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (IscaWI) |
DS740244: 10264-10324 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUCUCCCAUCUUGAAGUCCGCACGGGGGCCAGCCCAUCUUUGGGCUGCUGGCUUGUUGUUUGAGGCGGCAAGCUGCCCAAUGAAGGGCUGGCGUCCUGCGGUACAACCAUCCCCAAGAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GUCUCCCAUCUUGAAGU---| C G A U U G UUGUUGU
CCGCA GGG GCCAGCCC UC UUGGGC GCU GC \
GGCGU CCU CGGUCGGG AG AACCCG CGA CG U
AAGAGAACCCCUACCAACAU^ - G A U U A GCGGAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Al |
Mi |
Mi |
Mi |
Sa |
Sa |
Sa |
Sa |
To |
|
|
|
|
|
|
|
|
|
|
Star sequence |
Isc-Mir-22-P2_5p* |
mirBase accession | None |
Sequence |
0- AGCCCAUCUUUGGGCUGCUGGC -22
Get sequence
|
Mature sequence |
Isc-Mir-22-P2_3p |
mirBase accession | None |
Sequence |
39- AAGCUGCCCAAUGAAGGGCUGG -61
Get sequence
|