MirGeneDB 3.0

MirGeneDB ID

Sko-Mir-22-P2

Family name MIR-22 (all species)
Species Saccoglossus (Saccoglossus kowalevskii)
MiRBase ID sko-mir-4834
Paralogues
Orthologues Aae-Mir-22-P2  Aga-Mir-22-P2  Agr-Mir-22-P2  Asu-Mir-22-P2  Bfl-Mir-22-P2a  Bfl-Mir-22-P2b  Bfl-Mir-22-P2c  Bge-Mir-22-P2  Bla-Mir-22-P2a  Bla-Mir-22-P2b  Bla-Mir-22-P2c  Cbr-Mir-22-P2-v1  Cel-Mir-22-P2  Csc-Mir-22-P2  Cte-Mir-22-P2  Dan-Mir-22-P2  Dlo-Mir-22-P2  Dma-Mir-22-P2  Dme-Mir-22-P2  Dmo-Mir-22-P2  Dpu-Mir-22-P2  Dsi-Mir-22-P2  Dya-Mir-22-P2  Eba-Mir-22-P2  Esc-Mir-22-P2  Gpa-Mir-22-P2  Hme-Mir-22-P2  Hru-Mir-22-P2  Isc-Mir-22-P2  Lan-Mir-22-P2  Lgi-Mir-22-P2  Lhy-Mir-22-P2  Llo-Mir-22-P2  Lpo-Mir-22-P2f  Lpo-Mir-22-P2g  Lpo-Mir-22-P2h  Lpo-Mir-22-P2i  Mgi-Mir-22-P2  Mom-Mir-22-P2  Npo-Mir-22-P2  Ofu-Mir-22-P2j  Ofu-Mir-22-P2k  Ovu-Mir-22-P2  Pau-Mir-22-P2  Pca-Mir-22-P2  Pcr-Mir-22-P2l  Pcr-Mir-22-P2m  Pdu-Mir-22-P2  Pfl-Mir-22-P2  Pmi-Mir-22-P2  Pve-Mir-22-P2  Rph-Mir-22-P2  Snu-Mir-22-P2  Spu-Mir-22-P2  Tca-Mir-22-P2-v1  Tur-Mir-22-P2  War-Mir-22-P2  Xbo-Mir-22-P2d  Xbo-Mir-22-P2e 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Skow_1.1)
NW_003120936.1: 115391-115447 [-]
Clustered miRNAs
(< 50kb from Mir-22-P2)
Mir-103 NW_003120936.1: 115062-115119 [-]
Mir-22-P2 NW_003120936.1: 115391-115447 [-]
Seed CAGCUGC
Precursor
(pre-Mir +30nt flank)
GUUUUAUUUAUGAUUUGCCUUGCCUUGCUACACUUCACGCUGCAUGCUAUUGCUUAUACCUCUCAACAGCUGCUACGUGGAGUGGAGCAGUGUACCAGGUAGUAGCUGCUGUCAUUC
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Structure
        10         20          30        40        50        
GUUUUAUUUAUGAUUUG-   --|  C     A         CU   U   A   CUUAU 
                  CCU  UGC UUGCU CACUUCACG  GCA GCU UUG     \
                  GGA  AUG GACGA GUGAGGUGC  CGU CGA AAC     A
CUUACUGUCGUCGAUGAU   CC^  U     G         AU   -   C   UCUCC 
     110       100        90        80         70        60
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o1 gene in Branchiostoma and Xenoturbella.
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sko-Mir-22-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- CACUUCACGCUGCAUGCUAUUG -22
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Mature sequence

Sko-Mir-22-P2_3p

mirBase accessionMIMAT0020050
Sequence
35- ACAGCUGCUACGUGGAGUGGAG -57
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