Mir-22-P2f

MirGeneDB ID

Lpo-Mir-22-P2f

Family name

MIR-22 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-22-P2g Lpo-Mir-22-P2h Lpo-Mir-22-P2i

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bge-Mir-22-P2 Cbr-Mir-22-P2-v1 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ovu-Mir-22-P2 Pau-Mir-22-P2 Pca-Mir-22-P2 Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tur-Mir-22-P2 War-Mir-22-P2

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013670121.1: 15031-15088 [-] Ensembl

Seed

AGCUGCC

Precursor
(pre-Mir +30nt flank)

CUGGUCUAGAUCUCUCAACUCUUUCAGUGUAGUCCAUCAUCGGGCUGCUUGCUGGCUUUGGUAGGCGAGCUGCCCAGUGAAGGGCUGUCCUGUUAGAGUAUCCUCGGCAUGCUACGUC

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Structure

        10          20        30        40        50        
CUGGUCUAGAUCUCUCA--|    UU   UG      A    C    U      UGGCU 
                   ACUCU  CAG  UAGUCC UCAU GGGC GCUUGC     U
                   UGAGA  GUC  GUCGGG AGUG CCCG CGAGCG     U
CUGCAUCGUACGGCUCCUA^    UU   CU      A    A    U      GAUGG 
      110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-22-P2f_5p*

mirBase accession

None

Sequence

0- AGUCCAUCAUCGGGCUGCUUGC -22

Get sequence

Mature sequence

Lpo-Mir-22-P2f_3p

mirBase accession

None

Sequence

36- GAGCUGCCCAGUGAAGGGCUGU -58

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