MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-22-P2

Family name MIR-22 (all species)
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-1822
Paralogues
Orthologues Aae-Mir-22-P2  Aga-Mir-22-P2  Agr-Mir-22-P2  Asu-Mir-22-P2  Bfl-Mir-22-P2a  Bfl-Mir-22-P2b  Bfl-Mir-22-P2c  Bge-Mir-22-P2  Bla-Mir-22-P2a  Bla-Mir-22-P2b  Bla-Mir-22-P2c  Cel-Mir-22-P2  Csc-Mir-22-P2  Cte-Mir-22-P2  Dan-Mir-22-P2  Dlo-Mir-22-P2  Dma-Mir-22-P2  Dme-Mir-22-P2  Dmo-Mir-22-P2  Dpu-Mir-22-P2  Dsi-Mir-22-P2  Dya-Mir-22-P2  Eba-Mir-22-P2  Esc-Mir-22-P2  Gpa-Mir-22-P2  Hme-Mir-22-P2  Hru-Mir-22-P2  Isc-Mir-22-P2  Lan-Mir-22-P2  Lgi-Mir-22-P2  Lhy-Mir-22-P2  Llo-Mir-22-P2  Lpo-Mir-22-P2f  Lpo-Mir-22-P2g  Lpo-Mir-22-P2h  Lpo-Mir-22-P2i  Mgi-Mir-22-P2  Mom-Mir-22-P2  Npo-Mir-22-P2  Ofu-Mir-22-P2j  Ofu-Mir-22-P2k  Ovu-Mir-22-P2  Pau-Mir-22-P2  Pca-Mir-22-P2  Pcr-Mir-22-P2l  Pcr-Mir-22-P2m  Pdu-Mir-22-P2  Pfl-Mir-22-P2  Pmi-Mir-22-P2  Pve-Mir-22-P2  Rph-Mir-22-P2  Sko-Mir-22-P2  Snu-Mir-22-P2  Spu-Mir-22-P2  Tca-Mir-22-P2-v1  Tur-Mir-22-P2  War-Mir-22-P2  Xbo-Mir-22-P2d  Xbo-Mir-22-P2e 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CB4)		 II: 9704350-9704413 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-22-P2-v1)		 Mir-22-P2-v1 II: 9704350-9704413 [-] Ensembl
Mir-22-P2-v2 II: 9704350-9704413 [-] Ensembl
Variant

Cbr-Mir-22-P2-v1
Seed AGCUGCC
Precursor
(pre-Mir +30nt flank)		 
CCUUUUAUUCAAAGUCUAGAAAGGUCCGAGAGCCUAUCCCGGAACGCUAUCGGUUGCACUUUUCAAAAAACCGAGCUGCCCGGGGAUAGACUCUUGGCUUCAGAAAGACAUUAUUUUAUUAUGC
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Structure
        10             20        30        40          50        60  
CCUUUUAUUCAAAGUCUA-----| AA  U       C       -  AAC  UA-    UUGCACUU 
                       GA  GG CCGAGAG CUAUCCC GG   GC   UCGG        \
                       CU  UC GGUUCUC GAUAGGG CC   CG   AGCC        U
CGUAUUAUUUUAUUACAGAAAGA^ --  -       A       G  ---  UCG    AAAAAACU 
  120       110       100           90        80           70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-22-P2-v1_5p*
mirBase accessionNone
Sequence 
0- AGCCUAUCCCGGAACGCUAUCGG -23
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Mature sequence

Cbr-Mir-22-P2-v1_3p
mirBase accessionMIMAT0011481
Sequence 
42- GAGCUGCCCGGGGAUAGACUCU -64
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Variant

Cbr-Mir-22-P2-v2
Seed GAGCUGC
Precursor
(pre-Mir +30nt flank)		 
CCUUUUAUUCAAAGUCUAGAAAGGUCCGAGAGCCUAUCCCGGAACGCUAUCGGUUGCACUUUUCAAAAAACCGAGCUGCCCGGGGAUAGACUCUUGGCUUCAGAAAGACAUUAUUUUAUUAUGC
Get precursor sequence
Structure
        10             20        30        40          50        60  
CCUUUUAUUCAAAGUCUA-----| AA  U       C       -  AAC  UA-     UGCACUU 
                       GA  GG CCGAGAG CUAUCCC GG   GC   UCGGU       \
                       CU  UC GGUUCUC GAUAGGG CC   CG   AGCCA       U
CGUAUUAUUUUAUUACAGAAAGA^ --  -       A       G  ---  UCG     AAAAACU 
  120       110       100           90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Star sequence

Cbr-Mir-22-P2-v2_5p*
mirBase accessionNone
Sequence 
0- AGCCUAUCCCGGAACGCUAUCGGU -24
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Mature sequence

Cbr-Mir-22-P2-v2_3p
mirBase accessionMIMAT0011481
Sequence 
41- CGAGCUGCCCGGGGAUAGACUCU -64
Get sequence