MirGeneDB ID | Ovu-Mir-22-P2 |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-22-P1
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Orthologues |
Aae-Mir-22-P2
Asu-Mir-22-P2
Bge-Mir-22-P2
Cbr-Mir-22-P2-v1
Cbr-Mir-22-P2-v2
Cel-Mir-22-P2
Cgi-Mir-22-P2
Csc-Mir-22-P2
Cte-Mir-22-P2
Dan-Mir-22-P2
Dma-Mir-22-P2
Dme-Mir-22-P2
Dmo-Mir-22-P2
Dpu-Mir-22-P2
Dsi-Mir-22-P2
Dya-Mir-22-P2
Esc-Mir-22-P2
Hme-Mir-22-P2
Isc-Mir-22-P2
Lan-Mir-22-P2
Lgi-Mir-22-P2
Lpo-Mir-22-P2a
Lpo-Mir-22-P2b
Lpo-Mir-22-P2c
Lpo-Mir-22-P2d
Npo-Mir-22-P2
Pfl-Mir-22-o2
Pmi-Mir-22-o2
Sko-Mir-22-o2
Spu-Mir-22-o2
Tca-Mir-22-P2-v1
Tca-Mir-22-P2-v2
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01036531.1: 27585-27641 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GCACAAGGACGGAACCUGAUAGCUUGAUGUAGUUCUUCCUCUGGUCAGCUUUCUCUGUUGUUUGAGAGCUGCCAAAUGAAGGGCUGUAGAAGGUUCUUCAUCGCAACAGGGACGUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCACAAGGACGGAACCU- U-| GA CUC U UCUG
GA AGCUU UGUAGUUCUUC UGG CAGCUUUC U
CU UUGGA AUGUCGGGAAG ACC GUCGAGAG U
ACUGCAGGGACAACGCUA UC^ AG UAA - UUUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
Oc |
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Star sequence |
Ovu-Mir-22-P2_5p* |
mirBase accession | None |
Sequence |
0- AGUUCUUCCUCUGGUCAGCUUUC -23
Get sequence
|
Mature sequence |
Ovu-Mir-22-P2_3p |
mirBase accession | None |
Sequence |
35- GAGCUGCCAAAUGAAGGGCUGU -57
Get sequence
|