MirGeneDB 2.1

MirGeneDB ID

Ovu-Mir-22-P1

Family name MIR-22 (all species)
Seed GCUGCCU
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Mir-22-P2 
Orthologues Aca-Mir-22-P1b  Ami-Mir-22-P1b  Bfl-Mir-22-o1a  Bfl-Mir-22-o1b  Bfl-Mir-22-o1c  Bfl-Mir-22-P1  Bla-Mir-22-o1a  Bla-Mir-22-o1b  Bla-Mir-22-o1c  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cgi-Mir-22-P1  Cli-Mir-22-P1b  Cmi-Mir-22-P1a  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1a  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Ebu-Mir-22-P1o1  Efe-Mir-22-P1c  Efe-Mir-22-P1d  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1a  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Hsa-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Loc-Mir-22-P1a  Loc-Mir-22-P1b  Mal-Mir-22-P1a  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mml-Mir-22-P1b  Mmu-Mir-22-P1b  Mun-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Pbv-Mir-22-P1b  Pfl-Mir-22-P1  Pma-Mir-22-P1o2  Pma-Mir-22-P1o3  Rno-Mir-22-P1b  Sha-Mir-22-P1b  Sme-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1a  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1a  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  Xbo-Mir-22-o1d  Xbo-Mir-22-o1e  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01036531.1: 29356-29416 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCCAACCGGUCGAUGCUGUUGGGCUGACAGCUCCUCUUUAGGUUGCCUUGUGGUCACUUCAACCAAGCUGCCUGAUGAAGAGCUGUCCAGUCUCUCAGUCUAAGCUGCUUCCGUCUCA
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Structure
        10          20         30        40        50          
CCCCCCAACCGGUCGAU--    UU     -|       C  U      U  C   UGGUCA 
                   GCUG  GGGCU GACAGCUC UC UUAGGU GC UUG      \
                   UGAC  UCUGA CUGUCGAG AG AGUCCG CG AAC      C
ACUCUGCCUUCGUCGAAUC    UC     C^       A  U      U  -   CAACUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc Oc
Star sequence

Ovu-Mir-22-P1_5p*

mirBase accessionNone
Sequence
0- CAGCUCCUCUUUAGGUUGCCUUG -23
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Mature sequence

Ovu-Mir-22-P1_3p

mirBase accessionNone
Sequence
38- AGCUGCCUGAUGAAGAGCUGUCC -61
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