MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-22-P1b

Family name MIR-22 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-22
Paralogues
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Eba-Mir-22-P1  Eca-Mir-22-P1b  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Gsa-Mir-22-P1  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1b  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rph-Mir-22-P1  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  War-Mir-22-P1  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(rn6)		 chr10: 62299610-62299669 [+] UCSC Ensembl
Seed AGCUGCC
Precursor
(pre-Mir +30nt flank)		 
UCCCACACGCUCACCUGGCUGAGCCGCAGUAGUUCUUCAGUGGCAAGCUUUAUGUCCUGACCCAGCUAAAGCUGCCAGUUGAAGAACUGUUGCCCUCUGCCACUGGCUUCGAGGAGGAAG
Get precursor sequence
Structure
        10           20        30        40         50         
UCCCACACGCUCACCUG---| U   CC               -     A      UGUCCU 
                    GC GAG  GCAGUAGUUCUUCAG UGGCA GCUUUA      G
                    CG CUC  CGUUGUCAAGAAGUU ACCGU CGAAAU      A
GAAGGAGGAGCUUCGGUCAC^ U   C-               G     -      CGACCC 
.       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-22-P1b_5p*
mirBase accessionMIMAT0003152
Sequence 
0- AGUUCUUCAGUGGCAAGCUUUA -22
Get sequence
Proposed targets microrna.org: MIMAT0003152
TargetScanVert: rno-miR-22-5p
miRDB: MIMAT0003152
Mature sequence

Rno-Mir-22-P1b_3p
mirBase accessionMIMAT0000791
Sequence 
38- AAGCUGCCAGUUGAAGAACUGU -60
Get sequence
Proposed targets microrna.org: MIMAT0000791
TargetScanVert: rno-miR-22-3p
miRDB: MIMAT0000791