Mir-22-P1b

MirGeneDB ID

Hsa-Mir-22-P1b

Family name

MIR-22 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-22

Paralogues

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Eca-Mir-22-P1b Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(hg38)

chr17: 1713914-1713973 [-] UCSC Ensembl

Seed

AGCUGCC

Precursor
(pre-Mir +30nt flank)

UCUCACGCCCUCACCUGGCUGAGCCGCAGUAGUUCUUCAGUGGCAAGCUUUAUGUCCUGACCCAGCUAAAGCUGCCAGUUGAAGAACUGUUGCCCUCUGCCCCUGGCUUCGAGGAGGAGG

Get precursor sequence

Structure

        10           20        30        40         50         
UCUCACGCCCUCACCUG---| U   CC               -     A      UGUCCU 
                    GC GAG  GCAGUAGUUCUUCAG UGGCA GCUUUA      G
                    CG CUC  CGUUGUCAAGAAGUU ACCGU CGAAAU      A
GGAGGAGGAGCUUCGGUCCC^ U   C-               G     -      CGACCC 
.       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-22-P1b_5p*

mirBase accession

MIMAT0004495

Sequence

0- AGUUCUUCAGUGGCAAGCUUUA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004495
TargetScanVert: hsa-miR-22-5p
TargetMiner: hsa-miR-22-5p
miRDB: MIMAT0004495

Mature sequence

Hsa-Mir-22-P1b_3p

mirBase accession

MIMAT0000077

Sequence

38- AAGCUGCCAGUUGAAGAACUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000077
TargetScanVert: hsa-miR-22-3p
TargetMiner: hsa-miR-22-3p
miRDB: MIMAT0000077