MirGeneDB ID | Gga-Mir-22-P1b |
Family name |
MIR-22 (all species) |
Species |
Chicken (Gallus gallus) |
MiRBase ID |
gga-mir-22
|
Paralogues |
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Orthologues |
Aca-Mir-22-P1b
Agr-Mir-22-P1
Ami-Mir-22-P1b
Bfl-Mir-22-P1
Bko-Mir-22-P1
Bla-Mir-22-P1
Bpl-Mir-22-P1
Bta-Mir-22-P1b
Cfa-Mir-22-P1b
Cja-Mir-22-P1b
Cli-Mir-22-P1b
Cmi-Mir-22-P1b
Cpi-Mir-22-P1b
Cpo-Mir-22-P1b
Cte-Mir-22-P1
Dno-Mir-22-P1b
Dre-Mir-22-P1b1
Dre-Mir-22-P1b2
Eba-Mir-22-P1
Eca-Mir-22-P1b
Egr-Mir-22-P1
Esc-Mir-22-P1
Ete-Mir-22-P1b
Gja-Mir-22-P1b
Gmo-Mir-22-P1b1
Gmo-Mir-22-P1b2
Gsa-Mir-22-P1
Hru-Mir-22-P1
Hsa-Mir-22-P1b
Laf-Mir-22-P1b
Lan-Mir-22-P1
Lch-Mir-22-P1b
Lgi-Mir-22-P1
Lhy-Mir-22-P1
Llo-Mir-22-P1
Loc-Mir-22-P1b
Mal-Mir-22-P1b1
Mal-Mir-22-P1b2
Mdo-Mir-22-P1b
Mgi-Mir-22-P1
Mml-Mir-22-P1b
Mmr-Mir-22-P1b
Mmu-Mir-22-P1b
Mom-Mir-22-P1
Mun-Mir-22-P1b
Neu-Mir-22-P1b
Npo-Mir-22-P1
Oan-Mir-22-P1b
Obi-Mir-22-P1
Ocu-Mir-22-P1b
Ofu-Mir-22-P1
Ovu-Mir-22-P1
Pab-Mir-22-P1b
Pau-Mir-22-P1
Pbv-Mir-22-P1b
Pca-Mir-22-P1
Pcr-Mir-22-P1
Pdu-Mir-22-P1
Pfl-Mir-22-P1
Pve-Mir-22-P1
Rno-Mir-22-P1b
Rph-Mir-22-P1
Sha-Mir-22-P1b
Sma-Mir-22-P1
Sme-Mir-22-P1
Snu-Mir-22-P1
Spt-Mir-22-P1b
Sto-Mir-22-P1b
Tgu-Mir-22-P1b
Tni-Mir-22-P1b1
Tni-Mir-22-P1b2
War-Mir-22-P1
Xla-Mir-22-P1b3
Xla-Mir-22-P1b4
Xtr-Mir-22-P1b
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
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Genome context (Gallus_gallus.GRCg6a) |
19: 5528034-5528096 [-]
UCSC
Ensembl
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Seed |
AGCUGCC |
Precursor (pre-Mir +30nt flank) |
CCCUCUGCCCGCUCCUGGCUGCCCGGCAGCAGUUCUUCAGUGGCAAGCUUUAUGUCCUUCUCUAGUAGCUAAAGCUGCCAGUUGAAGAACUGUUGAAUGUAGCCACGUUCAUCGCUGCAAUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCCUCUGCCCGCUCCUG---| CCGG - A UGUCCUUC
GCUGC CAGCAGUUCUUCAG UGGCA GCUUUA \
CGAUG GUUGUCAAGAAGUU ACCGU CGAAAU U
UGUAACGUCGCUACUUGCAC^ UAA- G - CGAUGAUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ad |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Gg |
He |
He |
Hy |
Hy |
Ki |
Ki |
Li |
Li |
Lu |
Lu |
Ov |
Pr |
Pr |
Sc |
Sc |
Sp |
Sp |
Te |
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Star sequence |
Gga-Mir-22-P1b_5p* |
mirBase accession | MIMAT0007287 |
Sequence |
0- AGUUCUUCAGUGGCAAGCUUUA -22
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-22-5p
miRDB: MIMAT0007287
|
Mature sequence |
Gga-Mir-22-P1b_3p |
mirBase accession | MIMAT0007288 |
Sequence |
41- AAGCUGCCAGUUGAAGAACUGU -63
Get sequence
|
Proposed targets |
TargetScanVert: gga-miR-22-3p
miRDB: MIMAT0007288
|