Mir-22-P1b2

MirGeneDB ID

Mal-Mir-22-P1b2

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-22-P1a Mal-Mir-22-P1b1

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b2 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b2 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b2 Xtr-Mir-22-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884887.1: 86444-86506 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACCGUUGGCCCCCACUGGCUGACACACAGCAGUUCUUCACUGGCAAGCUUUAUGUUCCUGUACACAUGCUAAAGCUGCCAGCUGAAGAACUGCUCUGGUCAGCCCUGCCCCGGAUGACUCAAG

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Structure

        10           20        30         40        50        60 
ACCGUUGGCCCCCACUG---|     A  C            -      A      UGUUCCUG 
                    GCUGAC CA AGCAGUUCUUCA CUGGCA GCUUUA        \
                    CGACUG GU UCGUCAAGAAGU GACCGU CGAAAU        U
GAACUCAGUAGGCCCCGUCC^     -  C            C      -      CGUACACA 
 120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-22-P1b2_5p*

mirBase accession

None

Sequence

0- AGUUCUUCACUGGCAAGCUUUA -22

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Mature sequence

Mal-Mir-22-P1b2_3p

mirBase accession

None

Sequence

41- AAGCUGCCAGCUGAAGAACUGC -63

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