MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-22-P1

Family name MIR-22 (all species)
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID
Paralogues
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1a  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1a  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Eba-Mir-22-P1  Ebu-Mir-22-P1o1  Eca-Mir-22-P1b  Efe-Mir-22-P1c  Efe-Mir-22-P1d  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1a  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1a  Loc-Mir-22-P1b  Mal-Mir-22-P1a  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pma-Mir-22-P1o2  Pma-Mir-22-P1o3  Pve-Mir-22-P1  Rno-Mir-22-P1b  Rph-Mir-22-P1  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1a  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1a  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  War-Mir-22-P1  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006950278: 13180-13275 [-] UCSC Ensembl
Seed GCUGCCU
Precursor
(pre-Mir +30nt flank)		 
UAAGUGGUAACCAGUGCUUAUUCACAUUUCACAGACCUAAUCAGGUAUCAUGAAGAUCAUCUUACCUGCACUUUAAAAGAUUAACCUCUAAUAAAGUGCAUACAUGCUGCCUGAUUUGAGCUGUGACUUACGUAAGCUAAACGACCACAUUCAAAG
Get precursor sequence
Structure
        10        20          30        40        50        60        70       
UAAGUGGUAACCAGUGCUUAUUCACAUU--|     ACCU         U    AAGAUCAUCUUACCUGCACUUUAA 
                              UCACAG    AAUCAGGUA CAUG                        A
                              AGUGUC    UUAGUCCGU GUAC                        A
GAAACUUACACCAGCAAAUCGAAUGCAUUC^     GAGU         C    AUACGUGAAAUAAUCUCCAAUUAG 
    150       140       130       120       110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gsa-Mir-22-P1_5p*
mirBase accessionNone
Sequence 
0- ACAGACCUAAUCAGGUAUCAUG -22
Get sequence
Mature sequence

Gsa-Mir-22-P1_3p
mirBase accessionNone
Sequence 
74- UGCUGCCUGAUUUGAGCUGUGA -96
Get sequence