Mir-22-P1a

MirGeneDB ID

Cmi-Mir-22-P1a

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-22-P1b

Orthologues

Bfl-Mir-22-o1a Bfl-Mir-22-P1 Bla-Mir-22-o1a Bla-Mir-22-P1 Bpl-Mir-22-P1 Cgi-Mir-22-P1 Cte-Mir-22-P1 Dre-Mir-22-P1a Esc-Mir-22-P1 Gmo-Mir-22-P1a Lan-Mir-22-P1 Lch-Mir-22-P1a Lgi-Mir-22-P1 Loc-Mir-22-P1a Mal-Mir-22-P1a Npo-Mir-22-P1 Obi-Mir-22-P1 Ovu-Mir-22-P1 Pfl-Mir-22-P1 Sme-Mir-22-P1 Sto-Mir-22-P1a Tni-Mir-22-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636069.1: 354886-354945 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUUGGCCUGUGGAACUUGCCGUGUCACAGUCGUUCUUCACUGGCUAGCUUUAGUGCUUCACUCGGGUAAAGCUGCCAGUUGAAGAGCUGUUGUGGACGACCAUUUUAUCGCUCAUGUUAC

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Structure

        10           20        30         40        50         
CUUGGCCUGUGGAACUUGC---|  G      UC        -     U       GUGCUU 
                      CGU UCACAG  GUUCUUCA CUGGC AGCUUUA      C
                      GCA GGUGUU  CGAGAAGU GACCG UCGAAAU      A
CAUUGUACUCGCUAUUUUACCA^  -      GU        U     -       GGGCUC 
.       110       100         90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-22-P1a_5p*

mirBase accession

None

Sequence

0- CGUUCUUCACUGGCUAGCUUUA -22

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Mature sequence

Cmi-Mir-22-P1a_3p

mirBase accession

None

Sequence

38- AAGCUGCCAGUUGAAGAGCUGU -60

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