Mir-22-P1

MirGeneDB ID

Pve-Mir-22-P1

Family name

MIR-22 (all species)

Species

Vernerds tusk shell (Pictodentalium vernedei)

MiRBase ID

Paralogues

Pve-Mir-22-P2

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Pve_genome_chr_only)

Pve_Chr7: 236426519-236426576 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-22-P1)

Mir-22-P2 Pve_Chr7: 236402467-236402529 [-] Ensembl
Mir-22-P1 Pve_Chr7: 236426519-236426576 [-] Ensembl

Seed

GCUGCCU

Precursor
(pre-Mir +30nt flank)

UUUUCCAGAGACAUACUGCUGCUGUUAUGGCAGCCCUUCUUUAGGUAGUCUUGUAUGCUUGAUCAAGCUGCCUGAUGAAGAGCUGUCCAGAGCAAGAGCAUAAACUACAGCACAGCGG

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Structure

        10          20        30         40        50        
UUUUCCAGAGACAUACU--   GC    A   -|   C    U        U    UAUG 
                   GCU  UGUU UGG CAGC CUUC UUAGGUAG CUUG    C
                   CGA  ACGA ACC GUCG GAAG AGUCCGUC GAAC    U
GGCGACACGACAUCAAAUA   GA    G   U^   A    U        -    UAGU 
      110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pve-Mir-22-P1_5p*

mirBase accession

None

Sequence

0- CAGCCCUUCUUUAGGUAGUCUUG -23

Get sequence

Mature sequence

Pve-Mir-22-P1_3p

mirBase accession

None

Sequence

35- AGCUGCCUGAUGAAGAGCUGUCC -58

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