Mir-22-P1a

MirGeneDB ID

Tni-Mir-22-P1a

Family name

MIR-22 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-22b

Paralogues

Tni-Mir-22-P1b1 Tni-Mir-22-P1b2

Orthologues

Agr-Mir-22-P1 Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Cmi-Mir-22-P1a Cte-Mir-22-P1 Dre-Mir-22-P1a Eba-Mir-22-P1 Egr-Mir-22-P1 Esc-Mir-22-P1 Gmo-Mir-22-P1a Gsa-Mir-22-P1 Hru-Mir-22-P1 Lan-Mir-22-P1 Lch-Mir-22-P1a Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Mal-Mir-22-P1a Mgi-Mir-22-P1 Mom-Mir-22-P1 Npo-Mir-22-P1 Obi-Mir-22-P1 Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pau-Mir-22-P1 Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rph-Mir-22-P1 Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Sto-Mir-22-P1a War-Mir-22-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

12: 6138920-6138983 [+] UCSC Ensembl

Seed

AGCUGCC

Precursor
(pre-Mir +30nt flank)

GGCUGUAUCGGAGCAUCGUUGCCUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUCCUCCGACCCCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGUGUAACCAUGACAACGAGACUGCUCC

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Structure

        10           20        30         40        50        60 
GGCUGUAUCGGAGCAUC---|    CU     UC        -     U       UGUCCUCC 
                    GUUGC  CACAG  GUUCUUCA CUGGC AGCUUUA        G
                    CAAUG  GUGUU  CGAGAAGU GACCG UCGAAAU        A
CCUCGUCAGAGCAACAGUAC^    U-     GU        U     -       CGCACCCC 
  120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-22-P1a_5p*

mirBase accession

None

Sequence

0- CGUUCUUCACUGGCUAGCUUUA -22

Get sequence

Mature sequence

Tni-Mir-22-P1a_3p

mirBase accession

MIMAT0003046

Sequence

42- AAGCUGCCAGUUGAAGAGCUGU -64

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