MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-22-P1a

Family name MIR-22 (all species)
Seed AGCUGCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-22b
Paralogues Tni-Mir-22-P1b1  Tni-Mir-22-P1b2 
Orthologues Bfl-Mir-22-o1a  Bfl-Mir-22-P1  Bla-Mir-22-o1a  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1  Sto-Mir-22-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
12: 6138920-6138983 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGUAUCGGAGCAUCGUUGCCUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUCCUCCGACCCCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGUGUAACCAUGACAACGAGACUGCUCC
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Structure
        10           20        30         40        50        60 
GGCUGUAUCGGAGCAUC---|    CU     UC        -     U       UGUCCUCC 
                    GUUGC  CACAG  GUUCUUCA CUGGC AGCUUUA        G
                    CAAUG  GUGUU  CGAGAAGU GACCG UCGAAAU        A
CCUCGUCAGAGCAACAGUAC^    U-     GU        U     -       CGCACCCC 
  120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-22-P1a_5p*

mirBase accessionNone
Sequence
0- CGUUCUUCACUGGCUAGCUUUA -22
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Mature sequence

Tni-Mir-22-P1a_3p

mirBase accessionMIMAT0003046
Sequence
42- AAGCUGCCAGUUGAAGAGCUGU -64
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