Mir-22-P1

MirGeneDB ID

Bla-Mir-22-P1

Family name

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-22-o3a1a Bla-Mir-22-o3a1b Bla-Mir-22-o3a1c Bla-Mir-22-o3a1d Bla-Mir-22-o3a2a Bla-Mir-22-o3a2b Bla-Mir-22-o3a3 Bla-Mir-22-o3b1 Bla-Mir-22-o3b2 Bla-Mir-22-o3b3 Bla-Mir-22-o3c1 Bla-Mir-22-o3c2 Bla-Mir-22-P2a Bla-Mir-22-P2b Bla-Mir-22-P2c

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000015: 676729-676786 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-22-P1)

Mir-22-P1 Sc0000015: 676729-676786 [+] Ensembl
Mir-22-o3a1d Sc0000015: 691281-691339 [+] Ensembl
Mir-22-o3b1 Sc0000015: 691446-691505 [+] Ensembl
Mir-22-o3a1c Sc0000015: 691612-691670 [+] Ensembl
Mir-22-o3a1b Sc0000015: 692443-692501 [+] Ensembl
Mir-22-o3a2b Sc0000015: 692784-692842 [+] Ensembl
Mir-22-o3b2 Sc0000015: 692940-692999 [+] Ensembl
Mir-22-o3a3 Sc0000015: 693308-693366 [+] Ensembl
Mir-22-o3c1 Sc0000015: 694132-694190 [+] Ensembl
Mir-22-o3b3 Sc0000015: 694301-694360 [+] Ensembl
Mir-22-o3a2a Sc0000015: 695504-695562 [+] Ensembl
Mir-22-o3c2 Sc0000015: 695617-695675 [+] Ensembl
Mir-22-o3a1a Sc0000015: 695945-696003 [+] Ensembl

Seed

AGCUGCC

Precursor
(pre-Mir +30nt flank)

AGGACCGGAGCCGACUGCCCUUUGAAGCCCAGCUCUUCACUCGGUAGCUCUGUGAUUACCAGAUCAAAGCUGCCAGAUGAAGAGCUGUGCUUCCGGGGCGCUAUCCUCAAGUGCUGCC

Get precursor sequence

Structure

        10           20        30         40        50        
AGGACCGGAGCCGACUG---|   UU     C          -  C       C  UGAUU 
                    CCCU  GAAGC CAGCUCUUCA CU GGUAGCU UG     A
                    GGGG  CUUCG GUCGAGAAGU GA CCGUCGA AC     C
CCGUCGUGAACUCCUAUCGC^   C-     U          A  -       A  UAGAC 
      110       100         90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-22-P1_5p*

mirBase accession

None

Sequence

0- AGCUCUUCACUCGGUAGCUCUG -22

Get sequence

Mature sequence

Bla-Mir-22-P1_3p

mirBase accession

None

Sequence

36- AAGCUGCCAGAUGAAGAGCUGU -58

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