MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-22-P1b

Family name MIR-22 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-22-P1a 
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Eba-Mir-22-P1  Eca-Mir-22-P1b  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Gsa-Mir-22-P1  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rno-Mir-22-P1b  Rph-Mir-22-P1  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  War-Mir-22-P1  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)		 LG22: 6256492-6256554 [+] Ensembl
Seed AGCUGCC
Precursor
(pre-Mir +30nt flank)		 
AGAGCGUGUGAUUGUUGGCUAAUCUGCAGCAGUUCUUCACUGGCAAGCUUUAUGUCCCUGUGUACCAGCUAAAGCUGCCAGUUGAAGAACUGUUGUGGUUGGCUCUUUCCUGCCACAAGCACC
Get precursor sequence
Structure
        10           20        30         40        50        60 
AGAGCGUGUGAUUGUUG---|      U              -      A      UGUCCCUG 
                    GCUAAUC GCAGCAGUUCUUCA CUGGCA GCUUUA        \
                    CGGUUGG UGUUGUCAAGAAGU GACCGU CGAAAU        U
CCACGAACACCGUCCUUUCU^      -              U      -      CGACCAUG 
 120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-22-P1b_5p*
mirBase accessionNone
Sequence 
0- AGUUCUUCACUGGCAAGCUUUA -22
Get sequence
Mature sequence

Loc-Mir-22-P1b_3p
mirBase accessionNone
Sequence 
41- AAGCUGCCAGUUGAAGAACUGU -63
Get sequence