Mir-22-P1

MirGeneDB ID

Sma-Mir-22-P1

Family name

MIR-22 (all species)

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-745

Paralogues

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601627.3: 29064404-29064480 [-] UCSC Ensembl

Seed

GCUGCCU

Precursor
(pre-Mir +30nt flank)

GAAUAUCUUCAAAAUUUCAUCAUUUACUUCUCGGUUCUUACCAGGCAAGACAUGUUCAUCAUAUUUUUUGUAUUACAAAAAUACAUGCUGCCUGAUAAGAGCUGUGAACAAGUAUGAUUGAUCUUCACCUUAAAUAU

Get precursor sequence

Structure

        10         20         30        40        50        60         
GAAUAUCUUCAAAAUUUC-     UUAC-|  U         C      A A   GUUCAUCAUAUUUUU 
                   AUCAU     UUC CGGUUCUUA CAGGCA G CAU               \
                   UAGUA     AAG GUCGAGAAU GUCCGU C GUA               U
UAUAAAUUCCACUUCUAGU     UGAAC^  U         A      - -   CAUAAAAACAUUAUG 
     130       120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Star sequence

Sma-Mir-22-P1_5p*

mirBase accession

MIMAT0033588

Sequence

0- UCGGUUCUUACCAGGCAAGACAU -23

Get sequence

Mature sequence

Sma-Mir-22-P1_3p

mirBase accession

MIMAT0033589

Sequence

55- UGCUGCCUGAUAAGAGCUGUGA -77

Get sequence