Mir-22-P1b1

MirGeneDB ID

Gmo-Mir-22-P1b1

Family name

MIR-22 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-22a-1

Paralogues

Gmo-Mir-22-P1a Gmo-Mir-22-P1b2

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Eba-Mir-22-P1 Eca-Mir-22-P1b Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 War-Mir-22-P1 Xtr-Mir-22-P1b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1627: 222059-222120 [-] UCSC Ensembl

Seed

AGCUGCC

Precursor
(pre-Mir +30nt flank)

AUUCUGGGUGCCUCGUGGCUGACCCACAUCAGUUCUUCACUGGCAAGCUUUAUGUCAUAUGUACCAACUAAAGCUGCCAGCUGAAGAACUGUUGUGGUUGGCUCUUUCCUGCACCUCAAGAC

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Structure

        10           20        30         40        50        60
AUUCUGGGUGCCUCGUG---| UG   C   U          -      A      UGUCAUA 
                    GC  ACC ACA CAGUUCUUCA CUGGCA GCUUUA       U
                    CG  UGG UGU GUCAAGAAGU GACCGU CGAAAU       G
CAGAACUCCACGUCCUUUCU^ GU   -   U          C      -      CAACCAU 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-22-P1b1_5p*

mirBase accession

MIMAT0044131

Sequence

0- AGUUCUUCACUGGCAAGCUUUA -22

Get sequence

Mature sequence

Gmo-Mir-22-P1b1_3p

mirBase accession

MIMAT0044132

Sequence

40- AAGCUGCCAGCUGAAGAACUGU -62

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