MirGeneDB ID | Pdu-Mir-22-P1 |
Family name |
MIR-22 (all species) |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
Pdu-Mir-22-P2
|
Orthologues |
Aca-Mir-22-P1b
Agr-Mir-22-P1
Ami-Mir-22-P1b
Bfl-Mir-22-P1
Bko-Mir-22-P1
Bla-Mir-22-P1
Bpl-Mir-22-P1
Bta-Mir-22-P1b
Cfa-Mir-22-P1b
Cja-Mir-22-P1b
Cli-Mir-22-P1b
Cmi-Mir-22-P1a
Cmi-Mir-22-P1b
Cpi-Mir-22-P1b
Cpo-Mir-22-P1b
Cte-Mir-22-P1
Dno-Mir-22-P1b
Dre-Mir-22-P1a
Dre-Mir-22-P1b1
Dre-Mir-22-P1b2
Eba-Mir-22-P1
Ebu-Mir-22-P1o1
Eca-Mir-22-P1b
Efe-Mir-22-P1c
Efe-Mir-22-P1d
Egr-Mir-22-P1
Esc-Mir-22-P1
Ete-Mir-22-P1b
Gga-Mir-22-P1b
Gja-Mir-22-P1b
Gmo-Mir-22-P1a
Gmo-Mir-22-P1b1
Gmo-Mir-22-P1b2
Gsa-Mir-22-P1
Hru-Mir-22-P1
Hsa-Mir-22-P1b
Laf-Mir-22-P1b
Lan-Mir-22-P1
Lch-Mir-22-P1a
Lch-Mir-22-P1b
Lgi-Mir-22-P1
Lhy-Mir-22-P1
Llo-Mir-22-P1
Loc-Mir-22-P1a
Loc-Mir-22-P1b
Mal-Mir-22-P1a
Mal-Mir-22-P1b1
Mal-Mir-22-P1b2
Mdo-Mir-22-P1b
Mgi-Mir-22-P1
Mml-Mir-22-P1b
Mmr-Mir-22-P1b
Mmu-Mir-22-P1b
Mom-Mir-22-P1
Mun-Mir-22-P1b
Neu-Mir-22-P1b
Npo-Mir-22-P1
Oan-Mir-22-P1b
Obi-Mir-22-P1
Ocu-Mir-22-P1b
Ofu-Mir-22-P1
Ovu-Mir-22-P1
Pab-Mir-22-P1b
Pau-Mir-22-P1
Pbv-Mir-22-P1b
Pca-Mir-22-P1
Pcr-Mir-22-P1
Pfl-Mir-22-P1
Pma-Mir-22-P1o2
Pma-Mir-22-P1o3
Pve-Mir-22-P1
Rno-Mir-22-P1b
Rph-Mir-22-P1
Sha-Mir-22-P1b
Sma-Mir-22-P1
Sme-Mir-22-P1
Snu-Mir-22-P1
Spt-Mir-22-P1b
Sto-Mir-22-P1a
Sto-Mir-22-P1b
Tgu-Mir-22-P1b
Tni-Mir-22-P1a
Tni-Mir-22-P1b1
Tni-Mir-22-P1b2
War-Mir-22-P1
Xla-Mir-22-P1b3
Xla-Mir-22-P1b4
Xtr-Mir-22-P1b
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000002.1: 75490843-75490902 [-]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-22-P1) |
Mir-22-P2
JAPTHN010000002.1: 75489904-75489964 [-]
Ensembl
Mir-22-P1
JAPTHN010000002.1: 75490843-75490902 [-]
Ensembl
|
Seed |
GCUGCCU |
Precursor (pre-Mir +30nt flank) |
UCAACCAAUGCUUUAACAGCCAACGCUAGUCGGCCUUUCUCCAGGCAGGACUUUGUGUUUCUGACUAAAGCUGCCUGGUGAAGAGCUGUCAAGAGUGGCUAGGAGGCUACAGAAGAAAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAACCAAUGCUUUAAC---| ACG AGU C U GA GUGUU
AGCCA CU CGGC UUUC CCAGGCAG CUUU U
UCGGU GA GUCG GAAG GGUCCGUC GAAA C
CUAAAGAAGACAUCGGAGGA^ GA- ACU A U -- UCAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Mir-22-P1_5p* |
mirBase accession | None |
Sequence |
0- CGGCCUUUCUCCAGGCAGGACUUU -24
Get sequence
|
Mature sequence |
Pdu-Mir-22-P1_3p |
mirBase accession | None |
Sequence |
38- AGCUGCCUGGUGAAGAGCUGUC -60
Get sequence
|