Mir-22-P1

MirGeneDB ID

Pdu-Mir-22-P1

Family name

MIR-22 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-22-P2

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000002.1: 75490843-75490902 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-22-P1)

Mir-22-P2 JAPTHN010000002.1: 75489904-75489964 [-] Ensembl
Mir-22-P1 JAPTHN010000002.1: 75490843-75490902 [-] Ensembl

Seed

GCUGCCU

Precursor
(pre-Mir +30nt flank)

UCAACCAAUGCUUUAACAGCCAACGCUAGUCGGCCUUUCUCCAGGCAGGACUUUGUGUUUCUGACUAAAGCUGCCUGGUGAAGAGCUGUCAAGAGUGGCUAGGAGGCUACAGAAGAAAUC

Get precursor sequence

Structure

        10           20        30        40        50        60
UCAACCAAUGCUUUAAC---|    ACG  AGU    C    U        GA    GUGUU 
                    AGCCA   CU   CGGC UUUC CCAGGCAG  CUUU     U
                    UCGGU   GA   GUCG GAAG GGUCCGUC  GAAA     C
CUAAAGAAGACAUCGGAGGA^    GA-  ACU    A    U        --    UCAGU 
.       110       100         90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Star sequence

Pdu-Mir-22-P1_5p*

mirBase accession

None

Sequence

0- CGGCCUUUCUCCAGGCAGGACUUU -24

Get sequence

Mature sequence

Pdu-Mir-22-P1_3p

mirBase accession

None

Sequence

38- AGCUGCCUGGUGAAGAGCUGUC -60

Get sequence