Mir-22-P1b4

MirGeneDB ID

Xla-Mir-22-P1b4

Family name

MIR-22 (all species)

Seed

GUUCUUC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-22

Paralogues

Xla-Mir-22-P1b3

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Xtr-Mir-22-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 33649106-33649167 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCCAACGUGUUGCUGGCCCACUAGAAGCAGUUCUUCAGUGGCAAGCUUUAUGUUGUUCUUCUGUGCUAAAGCUGCCAGUUGAAGAACUGUUGAAAGCGGCUACUAUUCAUCUUGGAUUAU

Get precursor sequence

Structure

        10           20        30        40         50        60
UUGCCAACGUGUUGCUG---|  CA  AGA             -     A      UGUUGUU 
                    GCC  CU   AGCAGUUCUUCAG UGGCA GCUUUA       C
                    CGG  GA   UUGUCAAGAAGUU ACCGU CGAAAU       U
UAUUAGGUUCUACUUAUCAU^  C-  AAG             G     -      CGUGUCU 
120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-22-P1b4_5p

mirBase accession

MIMAT0046540

Sequence

0- AGUUCUUCAGUGGCAAGCUUUA -22

Get sequence

Co-mature sequence

Xla-Mir-22-P1b4_3p

mirBase accession

MIMAT0046541

Sequence

40- AAGCUGCCAGUUGAAGAACUGU -62

Get sequence