MirGeneDB ID | Sha-Mir-22-P1b |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Tasmanian devil (Sarcophilus harrisii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-22-P1b
Ami-Mir-22-P1b
Bfl-Mir-22-o1b
Bfl-Mir-22-P1
Bla-Mir-22-o1b
Bla-Mir-22-P1
Bpl-Mir-22-P1
Bta-Mir-22-P1b
Cfa-Mir-22-P1b
Cgi-Mir-22-P1
Cli-Mir-22-P1b
Cmi-Mir-22-P1b
Cpi-Mir-22-P1b
Cpo-Mir-22-P1b
Cte-Mir-22-P1
Dno-Mir-22-P1b
Dre-Mir-22-P1b1
Dre-Mir-22-P1b2
Esc-Mir-22-P1
Ete-Mir-22-P1b
Gga-Mir-22-P1b
Gja-Mir-22-P1b
Gmo-Mir-22-P1b1
Gmo-Mir-22-P1b2
Hsa-Mir-22-P1b
Lan-Mir-22-P1
Lch-Mir-22-P1b
Lgi-Mir-22-P1
Loc-Mir-22-P1b
Mal-Mir-22-P1b1
Mal-Mir-22-P1b2
Mdo-Mir-22-P1b
Mml-Mir-22-P1b
Mmu-Mir-22-P1b
Mun-Mir-22-P1b
Npo-Mir-22-P1
Oan-Mir-22-P1b
Obi-Mir-22-P1
Ocu-Mir-22-P1b
Ovu-Mir-22-P1
Pbv-Mir-22-P1b
Pfl-Mir-22-P1
Rno-Mir-22-P1b
Sme-Mir-22-P1
Spt-Mir-22-P1b
Sto-Mir-22-P1b
Tgu-Mir-22-P1b
Tni-Mir-22-P1b1
Tni-Mir-22-P1b2
Xla-Mir-22-P1b3
Xla-Mir-22-P1b4
Xtr-Mir-22-P1b
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
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Genome context (DEVIL_add) |
AFEY01011013_Mir-22-P1a: 1533-1592 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCCCCCACACAUUCCUGGCCGAGCCACAGCAGUUCUUCAGUGGCGAGCUUUAUGUCUUGUCCCAGCUAAAGCUGCCAGUUGAAGAACUGCUGAGCUCUGCUCCUGUCUUCGAGGAUUGAG
Get precursor sequence
|
Structure | 10 20 30 40 50
CCCCCCACACAUUCCUG---| C CA - G UGUCUU
GC GAGC CAGCAGUUCUUCAG UGGC AGCUUUA G
CG CUCG GUCGUCAAGAAGUU ACCG UCGAAAU U
GAGUUAGGAGCUUCUGUCCU^ U A- G - CGACCC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Not in assembly but in trace archive. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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Star sequence |
Sha-Mir-22-P1b_5p* |
mirBase accession | None |
Sequence |
0- AGUUCUUCAGUGGCGAGCUUUA -22
Get sequence
|
Mature sequence |
Sha-Mir-22-P1b_3p |
mirBase accession | None |
Sequence |
38- AAGCUGCCAGUUGAAGAACUGC -60
Get sequence
|