Mir-22-P1b

MirGeneDB ID

Sha-Mir-22-P1b

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(DEVIL_add)

AFEY01011013_Mir-22-P1a: 1533-1592 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCCCCACACAUUCCUGGCCGAGCCACAGCAGUUCUUCAGUGGCGAGCUUUAUGUCUUGUCCCAGCUAAAGCUGCCAGUUGAAGAACUGCUGAGCUCUGCUCCUGUCUUCGAGGAUUGAG

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Structure

        10           20        30        40         50         
CCCCCCACACAUUCCUG---| C    CA              -    G       UGUCUU 
                    GC GAGC  CAGCAGUUCUUCAG UGGC AGCUUUA      G
                    CG CUCG  GUCGUCAAGAAGUU ACCG UCGAAAU      U
GAGUUAGGAGCUUCUGUCCU^ U    A-              G    -       CGACCC 
.       110       100         90        80         70        60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-22-P1b_5p*

mirBase accession

None

Sequence

0- AGUUCUUCAGUGGCGAGCUUUA -22

Get sequence

Mature sequence

Sha-Mir-22-P1b_3p

mirBase accession

None

Sequence

38- AAGCUGCCAGUUGAAGAACUGC -60

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