Mir-22-P1b

MirGeneDB ID

Sto-Mir-22-P1b

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-22-P1a

Orthologues

Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01000512.1: 189391-189453 [+]

Precursor
(pre-Mir +30nt flank)

UUCCAUUAAUUACUCUGGCUAUCCUACAGCCGUUCUUCACUGGCUAGUUUUAUGUCACUGUCAAACAGCUAAAGCUGCCAGUUGAAGAACUGUUGAGGUUGGCUAUUUGCGACAGGACACUGA

Get precursor sequence

Structure

        10           20        30         40        50        60 
UUCCAUUAAUUACUCUG---|   U   A    C        -     U       UGUCACUG 
                    GCUA CCU CAGC GUUCUUCA CUGGC AGUUUUA        \
                    CGGU GGA GUUG CAAGAAGU GACCG UCGAAAU        U
AGUCACAGGACAGCGUUUAU^   U   -    U        U     -       CGACAAAC 
 120       110       100         90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Sto-Mir-22-P1b_5p*

mirBase accession

None

Sequence

0- CGUUCUUCACUGGCUAGUUUUA -22

Get sequence

Mature sequence

Sto-Mir-22-P1b_3p

mirBase accession

None

Sequence

41- AAGCUGCCAGUUGAAGAACUGU -63

Get sequence