| MirGeneDB ID | Lch-Mir-22-P1b |
|---|---|
| Family name | MIR-22 (all species) |
| Seed | AGCUGCC |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-22-P1a |
| Orthologues | Aca-Mir-22-P1b Ami-Mir-22-P1b Bfl-Mir-22-o1b Bfl-Mir-22-P1 Bla-Mir-22-o1b Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cgi-Mir-22-P1 Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Hsa-Mir-22-P1b Lan-Mir-22-P1 Lgi-Mir-22-P1 Loc-Mir-22-P1b Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mml-Mir-22-P1b Mmu-Mir-22-P1b Mun-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ovu-Mir-22-P1 Pbv-Mir-22-P1b Pfl-Mir-22-P1 Rno-Mir-22-P1b Sha-Mir-22-P1b Sme-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b |
| Node of Origin (locus) | Vertebrata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH127856.1: 309481-309543 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGGCACCCUGCUCUGUGGCAAACCUGCACCAGUUCUUCCCUGGCUAGCCUUAUGUCCAUCCUUGCUAGCUAAAGCUGCCAGUUGAAGAACUGUUGUGGUUUGCUGGUUUCCACCUGUCACUCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UGGCACCCUGCUCUGUG---| U C C- U C UGUCCAUC GCAAACC GCA CAGUUCUUC CUGGC AGC UUA \ CGUUUGG UGU GUCAAGAAG GACCG UCG AAU C ACUCACUGUCCACCUUUGGU^ - U UU - A CGAUCGUU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-22-P1b_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGUUCUUCCCUGGCUAGCCUUA -22
Get sequence
|
| Mature sequence | Lch-Mir-22-P1b_3p (predicted) |
| mirBase accession | None |
| Sequence |
41- AAGCUGCCAGUUGAAGAACUGU -63
Get sequence
|
