MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-22-P1b

Family name MIR-22 (all species)
Seed AGCUGCC
Species Zebra finch (Taeniopygia guttata)
MiRBase ID
Paralogues
Orthologues Aca-Mir-22-P1b  Ami-Mir-22-P1b  Bfl-Mir-22-o1b  Bfl-Mir-22-P1  Bla-Mir-22-o1b  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cgi-Mir-22-P1  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Hsa-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Loc-Mir-22-P1b  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mml-Mir-22-P1b  Mmu-Mir-22-P1b  Mun-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ovu-Mir-22-P1  Pbv-Mir-22-P1b  Pfl-Mir-22-P1  Rno-Mir-22-P1b  Sha-Mir-22-P1b  Sme-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
19: 4804172-4804234 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGCCACCCUGCUCCUGGCUAACCAGCACCAGUUCUUCAGUGGCAAGCUUUAUGUCCUUCUCCAGUAGCUAAAGCUGCCAGUUGAAGAACUGUUGAAUGUAGCCACUCUCUUCUCGUCACUGG
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Structure
        10           20        30        40         50        60 
GUGCCACCCUGCUCCUG---|   ACCAG  C           -     A      UGUCCUUC 
                    GCUA     CA CAGUUCUUCAG UGGCA GCUUUA        \
                    CGAU     GU GUCAAGAAGUU ACCGU CGAAAU        U
GGUCACUGCUCUUCUCUCAC^   GUAA-  U           G     -      CGAUGACC 
 120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-22-P1b_5p*

mirBase accessionNone
Sequence
0- AGUUCUUCAGUGGCAAGCUUUA -22
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Mature sequence

Tgu-Mir-22-P1b_3p

mirBase accessionNone
Sequence
41- AAGCUGCCAGUUGAAGAACUGU -63
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