MirGeneDB ID | Sto-Mir-22-P1a |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Cloudy Catshark (Scyliorhinus torazame) |
MiRBase ID |
|
Paralogues |
Sto-Mir-22-P1b
|
Orthologues |
Bfl-Mir-22-o1a
Bfl-Mir-22-P1
Bla-Mir-22-o1a
Bla-Mir-22-P1
Bpl-Mir-22-P1
Cgi-Mir-22-P1
Cmi-Mir-22-P1a
Cte-Mir-22-P1
Dre-Mir-22-P1a
Esc-Mir-22-P1
Gmo-Mir-22-P1a
Lan-Mir-22-P1
Lch-Mir-22-P1a
Lgi-Mir-22-P1
Loc-Mir-22-P1a
Mal-Mir-22-P1a
Npo-Mir-22-P1
Obi-Mir-22-P1
Ovu-Mir-22-P1
Pfl-Mir-22-P1
Sme-Mir-22-P1
Tni-Mir-22-P1a
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_003427355_STO_add) |
BFAA01002408.1: 121892-121951 [+]
|
Precursor (pre-Mir +30nt flank) |
UCAAGCUUGCAGACUGGGCCGUGCCACGCUCGUUCUUCACUGGCUAGCUUUACUGCUGUACUUUGGUAAAGCUGCCAGUUGAAGAGCUGUUGUGGGCGGCCAUUUUAUCACCAAUGACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAAGCUUGCAGACUGG---| G CUC - U CUGCUG
GCCGU CCACG GUUCUUCA CUGGC AGCUUUA U
CGGCG GGUGU CGAGAAGU GACCG UCGAAAU A
UACAGUAACCACUAUUUUAC^ - UGU U - GGUUUC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Sto-Mir-22-P1a_5p* |
mirBase accession | None |
Sequence |
0- CGUUCUUCACUGGCUAGCUUUA -22
Get sequence
|
Mature sequence |
Sto-Mir-22-P1a_3p |
mirBase accession | None |
Sequence |
38- AAGCUGCCAGUUGAAGAGCUGU -60
Get sequence
|