Mir-22-P1d

MirGeneDB ID

Efe-Mir-22-P1d

Family name

MIR-22 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-22-P1c

Orthologues

Agr-Mir-22-P1 Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Cte-Mir-22-P1 Eba-Mir-22-P1 Egr-Mir-22-P1 Esc-Mir-22-P1 Gsa-Mir-22-P1 Hru-Mir-22-P1 Lan-Mir-22-P1 Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Mgi-Mir-22-P1 Mom-Mir-22-P1 Npo-Mir-22-P1 Obi-Mir-22-P1 Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pau-Mir-22-P1 Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rph-Mir-22-P1 Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 War-Mir-22-P1

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efe-Mir-22-P1d_manual_assembly: 47-107 [+]

Seed

GCUGCCU

Precursor
(pre-Mir +30nt flank)

CAGGUUACCUUGAAGGCAUAGUUGGAGAAACGGUUCUUCAUCAGGCAGCCUUGGUUUUGAAAUAACACAAGCUGCCUGAUUAAGAGCUUUUUCUACGCUGGGCGAUCUUCAGAUCCGAGGA

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Structure

        10           20        30        40        50          
CAGGUUACCUUGAAGGCA---|   UGG     C       C          CUUGGUUUUG 
                     UAGU   AGAAA GGUUCUU AUCAGGCAGC          \
                     GUCG   UCUUU UCGAGAA UAGUCCGUCG          A
AGGAGCCUAGACUUCUAGCGG^   CA-     U       U          AACACAAUAA 
 .       110       100         90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-22-P1d_5p*

mirBase accession

None

Sequence

0- CGGUUCUUCAUCAGGCAGCCU -21

Get sequence

Mature sequence

Efe-Mir-22-P1d_3p

mirBase accession

None

Sequence

39- AGCUGCCUGAUUAAGAGCUUUU -61

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