MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-252-P2

Family name MIR-252 (all species)
Species Deer tick (Ixodes scapularis)
MiRBase ID
Paralogues Isc-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Aga-Mir-252-P2  Agr-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2k  Csc-Mir-252-P2l-v1  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dlo-Mir-252-P2  Dma-Mir-252-P2-v1  Dme-Mir-252-P2-v1  Dmo-Mir-252-P2-v1  Dpu-Mir-252-P2-v1  Dsi-Mir-252-P2-v1  Dya-Mir-252-P2-v1  Eba-Mir-252-P2  Gpa-Mir-252-P2  Hme-Mir-252-P2  Hru-Mir-252-P2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Llo-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Mgi-Mir-252-P2  Mom-Mir-252-P2  Npo-Mir-252-P2  Ofu-Mir-252-P2  Pau-Mir-252-P2  Pcr-Mir-252-P2  Pdu-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Pve-Mir-252-P2  Sko-Mir-252-P2  Snu-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Tur-Mir-252-P2-v1  War-Mir-252-P2  Xbo-Mir-252-P2 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609884.1: 72491914-72491974 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P2-v1)		 Mir-252-P2-v1 NW_024609884.1: 72491914-72491974 [-] Ensembl
Mir-252-P2-v2 NW_024609884.1: 72491915-72491973 [-] Ensembl
Variant

Isc-Mir-252-P2-v1
Seed UAAGUAC
Precursor
(pre-Mir +30nt flank)		 
AAGAUGUCUCCGGCCGUGUGACACUCCGGGCUAAGUACUAGCGCCGUAGGAGUGGGGUUUUCGGCUACUCCUGCAGCCUUGGUGCUUACCCCGGGGGCGUCACGUUGCAGCGCUUCACCCA
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Structure
        10         20         30        40        50          
AAGAUGUCUCCGGCCGU-     A-|      C          C  C       UGGGGUU 
                  GUGAC  CUCCGGG UAAGUACUAG GC GUAGGAG       \
                  CACUG  GGGGCCC AUUCGUGGUU CG CGUCCUC       U
ACCCACUUCGCGACGUUG     CG^      C          C  A       AUCGGCU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-252-P2-v1_5p
mirBase accessionNone
Sequence 
0- CUAAGUACUAGCGCCGUAGGAG -22
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Star sequence

Isc-Mir-252-P2-v1_3p* (predicted)
mirBase accessionNone
Sequence 
39- CCUGCAGCCUUGGUGCUUACCC -61
Get sequence
Variant

Isc-Mir-252-P2-v2
Seed AAGUACU
Precursor
(pre-Mir +30nt flank)		 
AGAUGUCUCCGGCCGUGUGACACUCCGGGCUAAGUACUAGCGCCGUAGGAGUGGGGUUUUCGGCUACUCCUGCAGCCUUGGUGCUUACCCCGGGGGCGUCACGUUGCAGCGCUUCACCC
Get precursor sequence
Structure
        10         20         30        40        50         
AGAUGUCUCCGGCCGUG-    A-|      C          C  C        GGGGUU 
                  UGAC  CUCCGGG UAAGUACUAG GC GUAGGAGU      \
                  ACUG  GGGGCCC AUUCGUGGUU CG CGUCCUCA      U
CCCACUUCGCGACGUUGC    CG^      C          C  A        UCGGCU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-252-P2-v2_5p
mirBase accessionNone
Sequence 
0- UAAGUACUAGCGCCGUAGGAGU -22
Get sequence
Star sequence

Isc-Mir-252-P2-v2_3p* (predicted)
mirBase accessionNone
Sequence 
37- UCCUGCAGCCUUGGUGCUUACC -59
Get sequence