MirGeneDB ID | Bge-Mir-252-P2-v1 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAC |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-252-P1
Bge-Mir-252-P2-v2
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Orthologues |
Aae-Mir-252-P2
Bfl-Mir-252-P2
Bla-Mir-252-P2
Cbr-Mir-252-P2
Cel-Mir-252-P2
Cgi-Mir-252-P2
Csc-Mir-252-P2
Cte-Mir-252-P2
Dan-Mir-252-P2-v1
Dan-Mir-252-P2-v2
Dma-Mir-252-P2
Dme-Mir-252-P2-v1
Dme-Mir-252-P2-v2
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
Dpu-Mir-252-P2-v1
Dpu-Mir-252-P2-v2
Dsi-Mir-252-P2-v1
Dsi-Mir-252-P2-v2
Dya-Mir-252-P2-v1
Dya-Mir-252-P2-v2
Hme-Mir-252-P2
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
Lan-Mir-252-P2
Lgi-Mir-252-P2
Lpo-Mir-252-P2c
Lpo-Mir-252-P2d
Npo-Mir-252-P2
Pfl-Mir-252-P2
Pmi-Mir-252-P2
Sko-Mir-252-P2
Spu-Mir-252-P2
Tca-Mir-252-P2
Xbo-Mir-252-P2g
Xbo-Mir-252-P2h
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (Bger_2.0) |
KZ617672.1: 79351-79412 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GGAGCACUGAAGACAAACCCUCUUCCGUUCCUAAGUACUAGUGCCGCAGGAGUGUGCUUGAGUAAUUUCUCCUGCUGCUCAAGUGCUUAUCAAUGGGAAGGGACGCCCUCCAAUGGAUGAGA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAGCACUGAAGACAAA---| C CC AGU C UGUGCUU
CCCU UUCCGUU UAAGUACU GC GCAGGAG G
GGGA AGGGUAA AUUCGUGA CG CGUCCUC A
AGAGUAGGUAACCUCCCGCA^ - CU ACU U UUUAAUG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Mature sequence |
Bge-Mir-252-P2-v1_5p |
mirBase accession | None |
Sequence |
0- CUAAGUACUAGUGCCGCAGGAGU -23
Get sequence
|
Star sequence |
Bge-Mir-252-P2-v1_3p* |
mirBase accession | None |
Sequence |
39- UCCUGCUGCUCAAGUGCUUAUCA -62
Get sequence
|