Mir-2001-P1

MirGeneDB ID

Bge-Mir-2001-P1

Family name

MIR-2001 (all species)

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-2001-P2

Orthologues

Agr-Mir-2001 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Dan-Mir-2001 Dgr-Mir-2001 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

B. germanica

Node of Origin (family)

Bilateria

Genome context
(Bger_2.0)

KZ617672.1: 125160-125225 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001-P1)

Mir-252-P2-v1 KZ617672.1: 79351-79412 [-] Ensembl
Mir-252-P2-v2 KZ617672.1: 79352-79411 [-] Ensembl
Mir-252-P1 KZ617672.1: 113720-113781 [-] Ensembl
Mir-2001-P1 KZ617672.1: 125160-125225 [-] Ensembl

Seed

UUGUGAC

Precursor
(pre-Mir +30nt flank)

ACUGAGCGGGGAUCGAAGAAGGGAUUUUGGUUUGUGACCGCCAUAAUGGGCAUUUCUUACAAUUCACUACAAUGCUCGUUAUCACGUUCGCAAUUCCGACGCCCUUCUAUGACGUCAUCUUCAGCU

Get precursor sequence

Structure

        10          20        30         40        50        60  
ACUGAGCGGGGAUCGAA--|     AUU    U-      C  CC          UUUCUUACA 
                   GAAGGG   UUGG  UUGUGA CG  AUAAUGGGCA         A
                   CUUCCC   AGCC  AACGCU GC  UAUUGCUCGU         U
UCGACUUCUACUGCAGUAU^     GC-    UU      U  AC          AACAUCACU 
    120       110       100         90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Mature sequence

Bge-Mir-2001-P1_5p

mirBase accession

None

Sequence

0- UUUGUGACCGCCAUAAUGGGCA -22

Get sequence

Star sequence

Bge-Mir-2001-P1_3p* (predicted)

mirBase accession

None

Sequence

44- CUCGUUAUCACGUUCGCAAUUC -66

Get sequence