MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2001

Family name MIR-2001 (all species)
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018525.1: 43444147-43444207 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2001)		 Mir-252-P1 CM018525.1: 43443779-43443838 [-] Ensembl
Mir-2001 CM018525.1: 43444147-43444207 [-] Ensembl
Seed UUGUGAC
Precursor
(pre-Mir +30nt flank)		 
UAGUCUAUGAUUGGCAGGGCUGAUGUCUUUGUUGUGACCGUUGUAAUGGGUAUAUAAUAUUUACAGUACUCAUUAUAACGUACACAAAUGUUGACACAGUCGUUAACAACGAGAAACCAUG
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Structure
        10           20        30         40        50         
UAGUCUAUGAUUGGCAG---|    A    UUUG-     AC              UAUAAU 
                    GGCUG UGUC     UUGUG  CGUUGUAAUGGGUA      A
                    CUGAC ACAG     AACAC  GCAAUAUUACUCAU      U
GUACCAAAGAGCAACAAUUG^    -    UUGUA     AU              GACAUU 
 .       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-2001_5p
mirBase accessionNone
Sequence 
0- GUUGUGACCGUUGUAAUGGGUA -22
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Star sequence

Rph-Mir-2001_3p*
mirBase accessionNone
Sequence 
38- CUCAUUAUAACGUACACAAAUGU -61
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