MirGeneDB 3.0
MirGeneDB ID

Lgi-Mir-2001

Family name MIR-2001 (all species)
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-2001
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Lotgi1)		 LOTGIsca_150: 486301-486357 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-2001)		 Mir-252-P2 LOTGIsca_150: 483957-484016 [-] Ensembl
Mir-252-P1 LOTGIsca_150: 486133-486191 [-] Ensembl
Mir-2001 LOTGIsca_150: 486301-486357 [-] Ensembl
Seed UGUGACC
Precursor
(pre-Mir +30nt flank)		 
AACGAGACAAAAGUAGAUGUACCGUGACCUUUGUGACCGUUAUAAUGGGCAUUUAGAAUUGAAGUGCUCCUUAUUACGAUCAGAAGGGUCUCGUUCCUUUAUAUCAUCAUCAGAAGU
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Structure
        10        20          30        40        50        
AACGAGACAAAAGUAGAUGUAC--| U       G   C   U    U       UAGA 
                        CG GACCUUU UGA CGU AUAA GGGCAUU    \
                        GC CUGGGAA ACU GCA UAUU CUCGUGA    A
UGAAGACUACUACUAUAUUUCCUU^ U       G   A   U    C       AGUU 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Lgi-Mir-2001_5p
mirBase accessionMIMAT0009731
Sequence 
0- UUGUGACCGUUAUAAUGGGCAUU -23
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Star sequence

Lgi-Mir-2001_3p* (predicted)
mirBase accessionNone
Sequence 
34- UGCUCCUUAUUACGAUCAGAAGG -57
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