MirGeneDB 3.0
MirGeneDB ID

Xbo-Mir-2001

Family name MIR-2001 (all species)
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues
Orthologues Agr-Mir-2001  Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Csc-Mir-2001  Cte-Mir-2001-v1  Dan-Mir-2001  Dgr-Mir-2001  Dlo-Mir-2001-v1  Dme-Mir-2001  Dmo-Mir-2001  Dsi-Mir-2001  Dya-Mir-2001  Eba-Mir-2001  Gpa-Mir-2001  Gsa-Mir-2001  Hme-Mir-2001  Hmi-Mir-2001  Hru-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lhy-Mir-2001  Llo-Mir-2001  Lpo-Mir-2001  Mgi-Mir-2001  Mom-Mir-2001  Npo-Mir-2001  Ofu-Mir-2001  Pau-Mir-2001  Pcr-Mir-2001  Pdu-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Pve-Mir-2001  Rph-Mir-2001  Sko-Mir-2001  Snu-Mir-2001  Spu-Mir-2001  Sro-Mir-2001  Tur-Mir-2001  War-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(genome.xe)		 scaffold836: 44083-44141 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2001)		 Mir-252-P2 scaffold836: 41595-41649 [-] UCSC Ensembl
Mir-252-P1g scaffold836: 42917-42972 [-] UCSC Ensembl
Mir-2001 scaffold836: 44083-44141 [-] UCSC Ensembl
Seed UGUGACC
Precursor
(pre-Mir +30nt flank)		 
UAUUCUAGCAGUUGUUUACUGUGUACAUAGUUGUGACCGUUAUAAUGGGCAUUUCACAUCAGAGCAAUGCUCAUUGAACAGUCGCAACCCAGUACAGCAGUCGUGUGCUUUUGGAUCGG
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Structure
        10         20         30        40        50         
UAUUCUAGCAGUUGUUU-    -|    AUA        C   A           UCACA 
                  ACUG UGUAC   GUUGUGAC GUU UAAUGGGCAUU     U
                  UGAC ACAUG   CAACGCUG CAA GUUACUCGUAA     C
GGCUAGGUUUUCGUGUGC    G^    ACC        A   -           CGAGA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
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Mature sequence

Xbo-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUGUGACCGUUAUAAUGGGCAUU -23
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Star sequence

Xbo-Mir-2001_3p*
mirBase accessionNone
Sequence 
37- UGCUCAUUGAACAGUCGCAACC -59
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