| MirGeneDB ID | Npo-Mir-2001 |
|---|---|
| Family name | MIR-2001 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001 |
| Node of Origin (locus) | Bilateria |
| Node of Origin (family) | Bilateria |
| Genome context (GCA_018389105_NPO) |
JACATO010000601.1: 22889-22948 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-2001) |
Mir-2001
JACATO010000601.1: 22889-22948 [+]
Ensembl
Mir-252-P1 JACATO010000601.1: 25040-25096 [+] Ensembl Mir-252-P2 JACATO010000601.1: 30774-30835 [+] Ensembl |
| Seed | UGUGACC |
| Precursor (pre-Mir +30nt flank) |
AGAAAAUAGAACUGUACGCACCUCUGGUCGUUGUGACCGUUACGAUGGGCAUUUGUCUUAAGUAUAAUGCUCCUUGUAACGAUCAUAGCUACCAGGUGGCGCUCUUUCUUCCAUGGCAGGGet precursor sequence |
| Structure | 10 20 30 40 50 AGAAAAUAGAACUGUAC- A -| C C U UGUCU GC CC UCUGGU GUUGUGA CGUUACGA GGGCAUU U CG GG GGACCA CGAUACU GCAAUGUU CUCGUAA A GGACGGUACCUUCUUUCU C U^ U A C UAUGA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Npo-Mir-2001_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUGACCGUUACGAUGGGCAUU -23
Get sequence
|
| Star sequence | Npo-Mir-2001_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- UGCUCCUUGUAACGAUCAUAGCU -60
Get sequence
|
