MirGeneDB ID | Lpo-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UGUGACC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Cgi-Mir-2001
Csc-Mir-2001
Cte-Mir-2001
Dan-Mir-2001
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Hme-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Npo-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Sko-Mir-2001
Spu-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013667319.1: 181922-181978 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGCUUGAGUUAAAGUUGAAAUGUCACCAUCUUGUGACCGUUAUAAUGGGCAUGAAACACAACAAUGCUCGUUUUAACGUUCACAGGGUGGACAUUUUCAUGAUUCUACCAAAAAAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AGCUUGAGUUAAAGUUG----| CA C U GAAAC
AAAUGU CCAUCUUGUGA CGUUA AAUGGGCAU \
UUUACA GGUGGGACACU GCAAU UUGCUCGUA A
GAAAAAAACCAUCUUAGUACU^ -- U U ACAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- UUGUGACCGUUAUAAUGGGCAU -22
Get sequence
|
Co-mature sequence |
Lpo-Mir-2001_3p |
mirBase accession | None |
Sequence |
35- GCUCGUUUUAACGUUCACAGGG -57
Get sequence
|