Mir-2001

MirGeneDB ID

Mom-Mir-2001

Family name

MIR-2001 (all species)

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010132739.1: 22313-22372 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001)

Mir-2001 JARFOD010132739.1: 22313-22372 [+] Ensembl
Mir-252-P1 JARFOD010132739.1: 22688-22745 [+] Ensembl
Mir-252-P2 JARFOD010132739.1: 23245-23304 [+] Ensembl

Seed

UGUGACC

Precursor
(pre-Mir +30nt flank)

AACAAUAAAAUGAAAAGAGUUUCGUUGCUCUUGUGACCGUUAUAAUGGGCAUUUAUAGAGGAAACAAUGUCCUUUAAAACGUUCACAAUGGUAAAGAAACAAAUAAAACCCGAUACACAU

Get precursor sequence

Structure

        10          20        30        40        50         
AACAAUAAAAUGAAAAGA--|    G     C      C    A   U       UAUAG 
                    GUUUC UUGCU UUGUGA CGUU UAA GGGCAUU     A
                    CAAAG AAUGG AACACU GCAA AUU CCUGUAA     G
UACACAUAGCCCAAAAUAAA^    A     U      U    A   U       CAAAG 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

To

Mature sequence

Mom-Mir-2001_5p

mirBase accession

None

Sequence

0- UUGUGACCGUUAUAAUGGGCAUU -23

Get sequence

Star sequence

Mom-Mir-2001_3p* (predicted)

mirBase accession

None

Sequence

37- UGUCCUUUAAAACGUUCACAAUG -60

Get sequence