MirGeneDB ID | Csc-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UGUGACC |
Species |
Arizona bark scorpion (Centruroides sculpturatus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Cgi-Mir-2001
Cte-Mir-2001
Dan-Mir-2001
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Hme-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lpo-Mir-2001
Npo-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Sko-Mir-2001
Spu-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_000671375.1_CSC) |
NW_019384413.1: 874212-874272 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACUAUCUUCGUAGAGUCGCCGUGUCCAACUUGUGACCGUAGUAAUGGGCAUGUCUAAAAAAAUCUCAUGCUCAUUUUUACGUUCACAAAAUGGAUGCCGUGCAAUACUUCUUUGCCUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UACUAUCUUCGUAGAGU--| C AC C U GUCUAAA
CGC GUGUCCA UUGUGA CGUAG AAUGGGCAU \
GUG CGUAGGU AACACU GCAUU UUACUCGUA A
UUAUCCGUUUCUUCAUAAC^ C AA U U CUCUAAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Csc-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- UUGUGACCGUAGUAAUGGGCAU -22
Get sequence
|
Co-mature sequence |
Csc-Mir-2001_3p |
mirBase accession | None |
Sequence |
39- GCUCAUUUUUACGUUCACAAAA -61
Get sequence
|