Mir-2001

MirGeneDB ID

Pfl-Mir-2001

Family name

MIR-2001 (all species)

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Pfl)

LD368470.1: 38645-38714 [+]

Clustered miRNAs
(< 50kb from Mir-2001)

Mir-2001 LD368470.1: 38645-38714 [+]
Mir-252-P1 LD368470.1: 39994-40053 [+]
Mir-252-P2 LD368470.1: 41174-41234 [+]

Seed

UGUGACC

Precursor
(pre-Mir +30nt flank)

CCCGUUUCUGUAUGUAUGUGUGUCACGCUGUUGUGACCGUUAUAAUGGGCAUCUCAGGACGCUAAGGUGCCAAAAAAUGCCUAUUCUAACGUUCAUAAUAGCGUGGUAUAUGGAAAGCACCAGACUAACA

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Structure

        10          20        30        40        50        60    
CCCGUUUCUGUAUGUAU--|   GU             C     U         CUCAGGACGCU 
                   GUGU  CACGCUGUUGUGA CGUUA AAUGGGCAU           A
                   UAUA  GUGCGAUAAUACU GCAAU UUAUCCGUA           A
ACAAUCAGACCACGAAAGG^   UG             U     C         AAAAACCGUGG 
.       120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pfl-Mir-2001_5p

mirBase accession

None

Sequence

0- UUGUGACCGUUAUAAUGGGCAUC -23

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Star sequence

Pfl-Mir-2001_3p*

mirBase accession

None

Sequence

47- UGCCUAUUCUAACGUUCAUAAUA -70

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