Mir-2001

MirGeneDB ID

Pau-Mir-2001

Family name

MIR-2001 (all species)

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000092.1: 873567-873625 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001)

Mir-2001 NMRA01000092.1: 873567-873625 [+] Ensembl
Mir-252-P1 NMRA01000092.1: 877634-877690 [+] Ensembl
Mir-252-P2 NMRA01000092.1: 878243-878300 [+] Ensembl

Seed

UGUGACC

Precursor
(pre-Mir +30nt flank)

UACUAAGUAUGCCUACACUGACUUACGAUCAUGUGACCGUUGUAAUGGGCACUUCCUUUUAAAAUGUGCUCUCUACAACGUCCACAUGACCGUGAUGUCUGUUCCUCAACCACUCCCGA

Get precursor sequence

Structure

        10         20         30        40        50         
UACUAAGUAUGCCUACACU-   -|    A       AC       AU     CUUCCUU 
                    GAC UUACG UCAUGUG  CGUUGUA  GGGCA       \
                    CUG AGUGC AGUACAC  GCAACAU  CUCGU       U
AGCCCUCACCAACUCCUUGU   U^    C       CU       CU     GUAAAAU 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Pau-Mir-2001_5p

mirBase accession

None

Sequence

0- AUGUGACCGUUGUAAUGGGCA -21

Get sequence

Star sequence

Pau-Mir-2001_3p* (predicted)

mirBase accession

None

Sequence

38- CUCUCUACAACGUCCACAUGA -59

Get sequence