Mir-2001

MirGeneDB ID

Pmi-Mir-2001

Family name

MIR-2001 (all species)

Species

Bat starfish (Patiria miniata)

MiRBase ID

pmi-mir-2001

Paralogues

Orthologues

Agr-Mir-2001 Bge-Mir-2001-P1 Bge-Mir-2001-P2 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Cte-Mir-2001-v1 Dan-Mir-2001 Dgr-Mir-2001 Dlo-Mir-2001-v1 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lan-Mir-2001-P3 Lan-Mir-2001-P4 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Pmin1)

JH782853.1: 10000-10059 [-]

Seed

UGUGACC

Precursor
(pre-Mir +30nt flank)

AUUAUUCUCCACUGAUUGUCAGUUUCGUUUAUGUGACCGUUACAAUGGGCAUGUUAUAUCCUAAAAAUGCCCGCUGCAGCGUUCACAACAACGGGCAUGACCAGAACAACCCAAAACCAU

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Structure

        10          20        30        40        50         
AUUAUUCUCCACUGAUU--|   GU      UA     C    A  A       GUUAUA 
                   GUCA  UUCGUU  UGUGA CGUU CA UGGGCAU      U
                   CAGU  GGGCAA  ACACU GCGA GU GCCCGUA      C
UACCAAAACCCAACAAGAC^   AC      CA     U    C  C       AAAAUC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em	To

Mature sequence

Pmi-Mir-2001_5p

mirBase accession

MIMAT0032175

Sequence

0- AUGUGACCGUUACAAUGGGCAU -22

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Star sequence

Pmi-Mir-2001_3p*

mirBase accession

None

Sequence

38- GCCCGCUGCAGCGUUCACAACA -60

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