Mir-2001-P3

MirGeneDB ID

Lan-Mir-2001-P3

Family name

MIR-2001 (all species)

Species

Lingula (Lingula anatina)

MiRBase ID

Paralogues

Lan-Mir-2001-P4

Orthologues

Agr-Mir-2001 Cbr-Mir-2001 Cel-Mir-2001 Csc-Mir-2001 Dan-Mir-2001 Dgr-Mir-2001 Dme-Mir-2001 Dmo-Mir-2001 Dsi-Mir-2001 Dya-Mir-2001 Eba-Mir-2001 Gpa-Mir-2001 Gsa-Mir-2001 Hme-Mir-2001 Hmi-Mir-2001 Hru-Mir-2001 Isc-Mir-2001 Lgi-Mir-2001 Lhy-Mir-2001 Llo-Mir-2001 Lpo-Mir-2001 Mgi-Mir-2001 Mom-Mir-2001 Npo-Mir-2001 Ofu-Mir-2001 Pau-Mir-2001 Pcr-Mir-2001 Pdu-Mir-2001 Pfl-Mir-2001 Pmi-Mir-2001 Pve-Mir-2001 Rph-Mir-2001 Sko-Mir-2001 Snu-Mir-2001 Spu-Mir-2001 Sro-Mir-2001 Tur-Mir-2001 War-Mir-2001 Xbo-Mir-2001

Node of Origin (locus)

L. anatina

Node of Origin (family)

Bilateria

Genome context
(LinAna_1.0)

LFEI01000174: 377902-377960 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2001-P3)

Mir-2001-P3 LFEI01000174: 377902-377960 [+] Ensembl
Mir-252-P1 LFEI01000174: 379115-379176 [+] Ensembl
Mir-252-P2 LFEI01000174: 379390-379447 [+] Ensembl

Seed

UGUGACC

Precursor
(pre-Mir +30nt flank)

ACAACAAAAACAGUACCCAUGAUCUGGUCGUUGUGACCGUUAUAAUGGGCAUGGACAUAUGAACAAUGCUCUUUAUAACGCUCAUAACCGACAGACAUGUCUGACACAUCAACCUCAGA

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Structure

        10           20        30         40        50         
ACAACAAAAACAGUACC---|   A    G   -      C        U     UGGACAU 
                    CAUG UCUG UCG UUGUGA CGUUAUAA GGGCA       \
                    GUAC AGAC AGC AAUACU GCAAUAUU CUCGU       A
AGACUCCAACUACACAGUCU^   -    -   C      C        U     AACAAGU 
       110       100          90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Lan-Mir-2001-P3_5p

mirBase accession

None

Sequence

0- UUGUGACCGUUAUAAUGGGCA -21

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Star sequence

Lan-Mir-2001-P3_3p* (predicted)

mirBase accession

None

Sequence

38- CUCUUUAUAACGCUCAUAACC -59

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