MirGeneDB ID | Cbr-Mir-2001 |
Family name |
MIR-2001 (all species) |
Seed |
UGUGACC |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-360
|
Paralogues |
|
Orthologues |
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cel-Mir-2001
Cgi-Mir-2001
Csc-Mir-2001
Cte-Mir-2001
Dan-Mir-2001
Dme-Mir-2001
Dmo-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Hme-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lpo-Mir-2001
Npo-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Sko-Mir-2001
Spu-Mir-2001
Xbo-Mir-2001
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (CB4) |
X: 11259477-11259537 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAUAUUCCAUAAAAAAGCGCCUAGGGUUUUGUGACCGUUGUUACGGUCAAUUCAUGUCUGACACAAUGACCGUAAUCCCGUUCACAACACCUUGUGUGGCUUGAAUAAUGAAAUUGUAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAUAUUCCAUAAAAAAGC ---| U C UU AUUCAUGU
GCC UAGGGU UUGUGA CG GUUACGGUCA \
CGG GUUCCA AACACU GC UAAUGCCAGU C
UAUGUUAAAGUAAUAAGUU- UGU^ C U CC AACACAGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
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Mature sequence |
Cbr-Mir-2001_5p |
mirBase accession | None |
Sequence |
0- UUGUGACCGUUGUUACGGUCA -21
Get sequence
|
Star sequence |
Cbr-Mir-2001_3p* |
mirBase accession | MIMAT0001303 |
Sequence |
40- ACCGUAAUCCCGUUCACAACA -61
Get sequence
|