MirGeneDB 2.1
MirGeneDB ID

Dsi-Mir-2001

Family name MIR-2001 (all species)
Seed UUGUGAC
Species Fruit fly (Drosophila simulans)
MiRBase ID
Paralogues
Orthologues Bge-Mir-2001-P1  Bge-Mir-2001-P2  Cbr-Mir-2001  Cel-Mir-2001  Cgi-Mir-2001  Csc-Mir-2001  Cte-Mir-2001  Dan-Mir-2001  Dme-Mir-2001  Dmo-Mir-2001  Dya-Mir-2001  Hme-Mir-2001  Isc-Mir-2001  Lan-Mir-2001-P3  Lan-Mir-2001-P4  Lgi-Mir-2001  Lpo-Mir-2001  Npo-Mir-2001  Pfl-Mir-2001  Pmi-Mir-2001  Sko-Mir-2001  Spu-Mir-2001  Xbo-Mir-2001 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Drosophila_simulans.ASM75419v3.dna.toplevel)		 3L: 11358169-11358234 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUAGUGACAAAUCCUGUGUUGCAGUUUCGUUUUGUGACCGACACUAACGGGUAAUUGUUUGGUCACCAGGAUUACUCGUUUUUGCGAUCACAAAUCAUGAAAUUGCAGCAAAACGCAACAAAGUCG
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Structure
        10        20        30          40        50        60   
UUAGUGACAAAUCCUGUG            --|      C  A  CU       AAUUGUUUGG 
                  UUGCAGUUUCGU  UUUGUGA CG CA  AACGGGU          \
                  GACGUUAAAGUA  AAACACU GC GU  UUGCUCA          U
GCUGAAACAACGCAAAAC            CU^      A  -  UU       UUAGGACCAC 
    120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
He Wh
Mature sequence

Dsi-Mir-2001_5p
mirBase accessionNone
Sequence 
0- UUUGUGACCGACACUAACGGGU -22
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Star sequence

Dsi-Mir-2001_3p*
mirBase accessionNone
Sequence 
45- UCGUUUUUGCGAUCACAAAUC -66
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