| MirGeneDB ID | Dmo-Mir-2001 |
|---|
| Family name |
MIR-2001 (all species) |
|---|
| Species |
Fruit fly (Drosophila mojavensis) |
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| MiRBase ID |
dmo-mir-274
|
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| Paralogues |
|
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| Orthologues |
Agr-Mir-2001
Bge-Mir-2001-P1
Bge-Mir-2001-P2
Cbr-Mir-2001
Cel-Mir-2001
Csc-Mir-2001
Cte-Mir-2001-v1
Dan-Mir-2001
Dgr-Mir-2001
Dlo-Mir-2001-v1
Dme-Mir-2001
Dsi-Mir-2001
Dya-Mir-2001
Eba-Mir-2001
Gpa-Mir-2001
Gsa-Mir-2001
Hme-Mir-2001
Hmi-Mir-2001
Hru-Mir-2001
Isc-Mir-2001
Lan-Mir-2001-P3
Lan-Mir-2001-P4
Lgi-Mir-2001
Lhy-Mir-2001
Llo-Mir-2001
Lpo-Mir-2001
Mgi-Mir-2001
Mom-Mir-2001
Npo-Mir-2001
Ofu-Mir-2001
Pau-Mir-2001
Pcr-Mir-2001
Pdu-Mir-2001
Pfl-Mir-2001
Pmi-Mir-2001
Pve-Mir-2001
Rph-Mir-2001
Sko-Mir-2001
Snu-Mir-2001
Spu-Mir-2001
Sro-Mir-2001
Tur-Mir-2001
War-Mir-2001
Xbo-Mir-2001
|
|---|
| Node of Origin (locus) |
Bilateria
|
|---|
| Node of Origin (family) |
Bilateria
|
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Genome context
(Dmoj_caf1) |
scaffold_6680: 18485500-18485576 [+]
Ensembl
|
|---|
| Seed |
UUGUGAC |
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Precursor
(pre-Mir +30nt flank) |
UGUCAAGUGUAUCCUGUGUUGCAGUUUCGGUUUGUGACCGACACUAACGGGUAGUUGAGGCAUCUCGUAUUCGCUGUUUUAUACUCGUUUUUGCGAUCACAAAUUCUGAAAUUGCAACGAAACGCAACGAAAAUGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGUCAAGUGUAUCCUGU-- --| C A CU AGUUGAGGCAUCUC
GUUGCAGUUUCGG UUUGUGA CG CA AACGGGU G
CAACGUUAAAGUC AAACACU GC GU UUGCUCA U
AAGUAAAAGCAACGCAAAG UU^ A - UU UAUUUUGUCGCUUA
130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Dmo-Mir-2001_5p |
| mirBase accession | MIMAT0008655 |
|---|
| Sequence |
0- UUUGUGACCGACACUAACGGGU -22
Get sequence
|
|---|
| Star sequence |
Dmo-Mir-2001_3p* |
| mirBase accession | None |
|---|
| Sequence |
54- UCGUUUUUGCGAUCACAAAUUCU -77
Get sequence
|
|---|
