MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-252-P1

Family name MIR-252 (all species)
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tca-Mir-252-P1  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018525.1: 43443779-43443838 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1)		 Mir-252-P1 CM018525.1: 43443779-43443838 [-] Ensembl
Mir-2001 CM018525.1: 43444147-43444207 [-] Ensembl
Seed UAAGUAG
Precursor
(pre-Mir +30nt flank)		 
AAAUUGAAGGGAUUGUGAAAAUGAUCUGUUCUAAGUAGUGAUGCCGCGGGUACUAUUAGAAACUGUUACCCAUGGUAACGCUGCUUACUGCGGUCAUGUUUCUAUGGCAACAUUAAUCGG
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Structure
        10        20           30        40        50         
AAAUUGAAGGGAUUGUGAAA---|   U    UC         A     C     CUAUUA 
                       AUGA CUGU  UAAGUAGUG UGCCG GGGUA      G
                       UACU GGCG  AUUCGUCGC AUGGU CCCAU      A
GGCUAAUUACAACGGUAUCUUUG^   -    UC         A     A     UGUCAA 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-252-P1_5p
mirBase accessionNone
Sequence 
0- CUAAGUAGUGAUGCCGCGGGUA -22
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Star sequence

Rph-Mir-252-P1_3p* (predicted)
mirBase accessionNone
Sequence 
38- CCCAUGGUAACGCUGCUUACUG -60
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