MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-252-P1-v1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-252b
Paralogues Bfl-Mir-252-P1-v2  Bfl-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049982.1: 20093383-20093447 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-252-P1-v1)
Mir-252-P2 NC_049982.1: 20092666-20092725 [-] UCSC
Mir-252-P1-v2 NC_049982.1: 20093381-20093449 [-] UCSC
Mir-252-P1-v1 NC_049982.1: 20093383-20093447 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UAGUUUGAGAUGAAAGCGACUGUCUCUGUGCUAAGUAGUACUGCCGCAGGGAGUGCUGUGGACUGAUUCUAUCCCCUGCGCAGUCCUACUUACAACAGGGAACAUUUCUAAUGCUUCAAACUUCA
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Structure
        10        20          30        40        50        60  
UAGUUUGAGAUGAAAGCGAC-  -|      GC       U     C      AGUGCUGUGG 
                     UG UCUCUGU  UAAGUAG ACUGC GCAGGG          A
                     AC AGGGACA  AUUCAUC UGACG CGUCCC          C
ACUUCAAACUUCGUAAUCUUU  A^      AC       C     -      CUAUCUUAGU 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Bfl-Mir-252-P1-v1_5p

mirBase accessionMIMAT0009499
Sequence
0- CUAAGUAGUACUGCCGCAGGGAG -23
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Star sequence

Bfl-Mir-252-P1-v1_3p*

mirBase accessionMIMAT0019151
Sequence
43- CCCUGCGCAGUCCUACUUACAA -65
Get sequence