MirGeneDB 3.0

MirGeneDB ID

Tca-Mir-252-P1

Family name MIR-252 (all species)
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-252b
Paralogues Tca-Mir-252-P2 
Orthologues Agr-Mir-252-P1  Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Cbr-Mir-252-P1  Cel-Mir-252-P1  Csc-Mir-252-P1k  Csc-Mir-252-P1l  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dgr-Mir-252-P1  Dlo-Mir-252-P1  Dma-Mir-252-P1  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Eba-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Hmi-Mir-252-P1  Hru-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lhy-Mir-252-P1  Llo-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Mgi-Mir-252-P1  Mom-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ofu-Mir-252-P1  Ovu-Mir-252-P1  Pau-Mir-252-P1  Pca-Mir-252-P1  Pdu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Rph-Mir-252-P1  Sko-Mir-252-P1  Snu-Mir-252-P1  Spu-Mir-252-P1  Sro-Mir-252-P1o1  Sro-Mir-252-P1o2  Tur-Mir-252-P1  War-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i  Xbo-Mir-252-P1j 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG9: 7050461-7050518 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1)
Mir-252-P1 LG9: 7050461-7050518 [+] Ensembl
Mir-252-P2 LG9: 7058373-7058428 [+] Ensembl
Seed UAAGUAG
Precursor
(pre-Mir +30nt flank)
ACCAGAAGAAAGCCUCUUGUCCACCCGGUAUUAAGUAGUUGCGCCGAAGGUGAUGUUUUUGAAAUCUCCUCGGUCUGGCUGCUUUAUACCGCAUGGAUGAAAAUCACCAAAAAAAGUC
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Structure
        10          20        30        40        50         
ACCAGAAGAAAGCCUCUU--|    CC      U         C     A  U  UGUUU 
                    GUCCA  CGGUAU AAGUAGUUG GCCGA GG GA     \
                    UAGGU  GCCAUA UUCGUCGGU UGGCU CC CU     U
CUGAAAAAAACCACUAAAAG^    AC      U         C     -  U  AAAGU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-252-P1_5p

mirBase accessionMIMAT0018806
Sequence
0- UUAAGUAGUUGCGCCGAAGGUGA -23
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Star sequence

Tca-Mir-252-P1_3p*

mirBase accessionMIMAT0018807
Sequence
36- UCCUCGGUCUGGCUGCUUUAUA -58
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