MirGeneDB ID | Tca-Mir-252-P1 |
Family name |
MIR-252 (all species) |
Species |
Red flour beetle (Tribolium castaneum) |
MiRBase ID |
tca-mir-252b
|
Paralogues |
Tca-Mir-252-P2
|
Orthologues |
Agr-Mir-252-P1
Asu-Mir-252-P1
Bfl-Mir-252-P1-v1
Bge-Mir-252-P1
Bla-Mir-252-P1-v1
Cbr-Mir-252-P1
Cel-Mir-252-P1
Csc-Mir-252-P1k
Csc-Mir-252-P1l
Cte-Mir-252-P1
Dan-Mir-252-P1a
Dan-Mir-252-P1b
Dgr-Mir-252-P1
Dlo-Mir-252-P1
Dma-Mir-252-P1
Dme-Mir-252-P1a
Dme-Mir-252-P1b
Dmo-Mir-252-P1a
Dmo-Mir-252-P1b
Dpu-Mir-252-P1
Dsi-Mir-252-P1a
Dsi-Mir-252-P1b
Dya-Mir-252-P1a
Dya-Mir-252-P1b
Eba-Mir-252-P1
Esc-Mir-252-P1
Hme-Mir-252-P1
Hmi-Mir-252-P1
Hru-Mir-252-P1
Isc-Mir-252-P1
Lan-Mir-252-P1
Lgi-Mir-252-P1
Lhy-Mir-252-P1
Llo-Mir-252-P1
Lpo-Mir-252-P1c
Lpo-Mir-252-P1e
Lpo-Mir-252-P1f
Mgi-Mir-252-P1
Mom-Mir-252-P1
Npo-Mir-252-P1
Obi-Mir-252-P1
Ofu-Mir-252-P1
Ovu-Mir-252-P1
Pau-Mir-252-P1
Pca-Mir-252-P1
Pdu-Mir-252-P1
Pfl-Mir-252-P1
Pmi-Mir-252-P1
Rph-Mir-252-P1
Sko-Mir-252-P1
Snu-Mir-252-P1
Spu-Mir-252-P1
Sro-Mir-252-P1o1
Sro-Mir-252-P1o2
Tur-Mir-252-P1
War-Mir-252-P1
Xbo-Mir-252-P1g
Xbo-Mir-252-P1h
Xbo-Mir-252-P1i
Xbo-Mir-252-P1j
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (Tcas5.2) |
LG9: 7050461-7050518 [+]
Ensembl
|
Clustered miRNAs (< 50kb from Mir-252-P1) |
Mir-252-P1
LG9: 7050461-7050518 [+]
Ensembl
Mir-252-P2
LG9: 7058373-7058428 [+]
Ensembl
|
Seed |
UAAGUAG |
Precursor (pre-Mir +30nt flank) |
ACCAGAAGAAAGCCUCUUGUCCACCCGGUAUUAAGUAGUUGCGCCGAAGGUGAUGUUUUUGAAAUCUCCUCGGUCUGGCUGCUUUAUACCGCAUGGAUGAAAAUCACCAAAAAAAGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCAGAAGAAAGCCUCUU--| CC U C A U UGUUU
GUCCA CGGUAU AAGUAGUUG GCCGA GG GA \
UAGGU GCCAUA UUCGUCGGU UGGCU CC CU U
CUGAAAAAAACCACUAAAAG^ AC U C - U AAAGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ad |
Ea |
Em |
Em |
Em |
Em |
Em |
Fe |
Fe |
Fe |
Fe |
Oo |
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Mature sequence |
Tca-Mir-252-P1_5p |
mirBase accession | MIMAT0018806 |
Sequence |
0- UUAAGUAGUUGCGCCGAAGGUGA -23
Get sequence
|
Star sequence |
Tca-Mir-252-P1_3p* |
mirBase accession | MIMAT0018807 |
Sequence |
36- UCCUCGGUCUGGCUGCUUUAUA -58
Get sequence
|