MirGeneDB 2.1

MirGeneDB ID

Tca-Mir-252-P1

Family name MIR-252 (all species)
Seed UAAGUAG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-252b
Paralogues Tca-Mir-252-P2 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dan-Mir-252-P1a  Dan-Mir-252-P1b  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dme-Mir-252-P1a  Dme-Mir-252-P1b  Dmo-Mir-252-P1a  Dmo-Mir-252-P1b  Dpu-Mir-252-P1  Dsi-Mir-252-P1a  Dsi-Mir-252-P1b  Dya-Mir-252-P1a  Dya-Mir-252-P1b  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Lpo-Mir-252-P1c  Lpo-Mir-252-P1e  Lpo-Mir-252-P1f  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Xbo-Mir-252-P1g  Xbo-Mir-252-P1h  Xbo-Mir-252-P1i 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)
LG9: 7050461-7050518 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-252-P1)
Mir-252-P1 LG9: 7050461-7050518 [+] Ensembl
Mir-252-P2 LG9: 7058373-7058428 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGAAGAAAGCCUCUUGUCCACCCGGUAUUAAGUAGUUGCGCCGAAGGUGAUGUUUUUGAAAUCUCCUCGGUCUGGCUGCUUUAUACCGCAUGGAUGAAAAUCACCAAAAAAAGUC
Get precursor sequence
Structure
        10          20        30        40        50         
ACCAGAAGAAAGCCUCUU--|    CC      U         C     A  U  UGUUU 
                    GUCCA  CGGUAU AAGUAGUUG GCCGA GG GA     \
                    UAGGU  GCCAUA UUCGUCGGU UGGCU CC CU     U
CUGAAAAAAACCACUAAAAG^    AC      U         C     -  U  AAAGU 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-252-P1_5p

mirBase accessionMIMAT0018806
Sequence
0- UUAAGUAGUUGCGCCGAAGGUGA -23
Get sequence
Star sequence

Tca-Mir-252-P1_3p*

mirBase accessionMIMAT0018807
Sequence
36- UCCUCGGUCUGGCUGCUUUAUA -58
Get sequence