MirGeneDB 2.1
MirGeneDB ID

Xbo-Mir-252-P1h

Family name MIR-252 (all species)
Seed UAAGUAG
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues Xbo-Mir-252-P1g  Xbo-Mir-252-P1i  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Orthologues Asu-Mir-252-P1  Bfl-Mir-252-P1-v1  Bfl-Mir-252-P1-v2  Bge-Mir-252-P1  Bla-Mir-252-P1-v1  Bla-Mir-252-P1-v2  Cbr-Mir-252-P1  Cel-Mir-252-P1  Cgi-Mir-252-P1  Csc-Mir-252-P1  Cte-Mir-252-P1  Dma-Mir-252-P1-v1  Dma-Mir-252-P1-v2  Dpu-Mir-252-P1  Esc-Mir-252-P1  Hme-Mir-252-P1  Isc-Mir-252-P1  Lan-Mir-252-P1  Lgi-Mir-252-P1  Npo-Mir-252-P1  Obi-Mir-252-P1  Ovu-Mir-252-P1  Pfl-Mir-252-P1  Pmi-Mir-252-P1  Sko-Mir-252-P1  Spu-Mir-252-P1  Tca-Mir-252-P1 
Node of Origin (locus) X. bocki
Node of Origin (family) Bilateria
Genome context
(Xbocki_plus)		 3C-assembly_contig_130: 2053-2112 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGCAAUGUGAGGACUGAAUUGGCCCAGUCUAAGUAGUACUGCCGCAGGUAAUGUACUACUUGUGUUACCUGCACUCUACUGCUUAUACUAGUCCUAUUCAAAUACAACGACGUCACAU
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Structure
        10          20        30        40        50          
AAUGCAAUGUGAGGACU--|   U  CCC   C         CUGCC        UGUACU 
                   GAAU GG   AGU UAAGUAGUA     GCAGGUAA      \
                   CUUA CC   UCA AUUCGUCAU     CGUCCAUU      A
UACACUGCAGCAACAUAAA^   U  UGA   U         CUCA-        GUGUUC 
.       110       100        90        80         70
Deep sequencing
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3' NTU
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
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Mature sequence

Xbo-Mir-252-P1h_5p
mirBase accessionNone
Sequence 
0- CUAAGUAGUACUGCCGCAGGUAA -23
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Star sequence

Xbo-Mir-252-P1h_3p*
mirBase accessionNone
Sequence 
38- ACCUGCACUCUACUGCUUAUAC -60
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